View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_251 (Length: 236)
Name: NF20384_low_251
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_251 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 12531307 - 12531101
Alignment:
| Q |
18 |
acttcgtccgacatacatctgatgccagctctccacaatcatctccctcacacatgccacatgcaagttatacttcttacatgatgatctgttatcaggg |
117 |
Q |
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| T |
12531307 |
acttcgtccgacatacatctgatgccagctctccacaatcatctccctcacacatgccacatgcaagttatacttcttacatgatgatctgttatcaggg |
12531208 |
T |
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| Q |
118 |
aaggactcagaaattatgataccgaggcaacaaataaaaaactcataaatttgtagtactaataattttaacatatcat-ttttaaagtataaatataca |
216 |
Q |
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| T |
12531207 |
acggactcagaaattatgatatagaggcaacaaataaaaaactcataaatttgtagtactaataattttaacatatcattttttaaagtataaatatata |
12531108 |
T |
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| Q |
217 |
ttgtaat |
223 |
Q |
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||||||| |
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| T |
12531107 |
ttgtaat |
12531101 |
T |
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