View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_254 (Length: 235)
Name: NF20384_low_254
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_254 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 51651324 - 51651543
Alignment:
| Q |
11 |
tcatcatattgtactctcttggtttcaaaaataagcaaaaaattctatgaatttagcttacttgtatattgtttatggataattctctaattggttggta |
110 |
Q |
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| T |
51651324 |
tcataatattgtactctctcggtttcaaaaataagcaaaaaattctatgaatgtagcttacttgtatattgtgtatggataattctctaattggttggta |
51651423 |
T |
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| Q |
111 |
cttgtggatgtatgttcttgttaaatacagatcacccgtcttctccccgatgcagtcggaactacttgtggccaacgacttgagaaggtctacggaactg |
210 |
Q |
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| T |
51651424 |
cttgtggatgtatgttcttgttaaatacagatcacccgtcttctccccgatgcagtcggaacgacttgtggccaacgacttgagaaggtctacggaactg |
51651523 |
T |
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| Q |
211 |
agcattgccatattcttcga |
230 |
Q |
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|||||||||| ||||||||| |
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| T |
51651524 |
agcattgccacattcttcga |
51651543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 19154450 - 19154348
Alignment:
| Q |
128 |
ttgttaaatacagatcacccgtcttctccccgatgcagtcggaactacttgtggccaacgacttgagaaggtctacggaactgagcattgccatattctt |
227 |
Q |
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||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||| || |||| || || |||||||| |||||| |
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| T |
19154450 |
ttgttaaatgcagatcacccgtcttctccctgatgcagtgggaactacttgtggtgaacgtcttgagaaagtatacgataccgaacattgccacattctt |
19154351 |
T |
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| Q |
228 |
cga |
230 |
Q |
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||| |
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| T |
19154350 |
cga |
19154348 |
T |
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