View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_261 (Length: 233)
Name: NF20384_low_261
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 46789891 - 46790092
Alignment:
| Q |
18 |
agagataacactaagaaaaagtggcaattttttcctaaaattgtgaatgagaaattaagagaagggaaattgatggaaattgtggatcaaagggttattg |
117 |
Q |
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| T |
46789891 |
agagataacactaagaaaaagtggcaattttttcctaaaattgtgaatgagaaattaagagaagggaaattgatggaaattgtggatcaaagggtagttg |
46789990 |
T |
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| Q |
118 |
attttggaggtgttgatgagaatgaggtgaaaaggttggtgtttattgctttgtggtgtatacaagagaagccaaggttgaggcctagtatggttgaagt |
217 |
Q |
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| T |
46789991 |
attttggaggtgttgatgagaatgaggtgaaaaggttggtgtttattgctttgtggtgtatacaagagaagccaaggttgaggcctagtatggttgaagt |
46790090 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
46790091 |
tg |
46790092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 23466492 - 23466321
Alignment:
| Q |
39 |
tggcaattttttcctaaaattgtgaatgagaaattaagagaagggaaattgatggaaattgtggatcaaagggttattgattttggaggtgttgatgaga |
138 |
Q |
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||||||| |||||| || ||||| || |||||| | | | |||||||| | ||||||||||| ||||| ||| | || || | ||| ||||||||||||| |
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| T |
23466492 |
tggcaatattttccgaagattgtaaacgagaaagtgaaacaagggaaaatcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgaga |
23466393 |
T |
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| Q |
139 |
atgaggtgaaaaggttggtgtttattgctttgtggtgtatacaagagaagccaaggttgaggcctagtatgg |
210 |
Q |
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||||||| | ||||| | | ||||||| |||||| | ||||||||||||||||||||||||||||||| |
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| T |
23466392 |
gggaggtgattaaattggtttatgttgctttatggtgtgtgcaagagaagccaaggttgaggcctagtatgg |
23466321 |
T |
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