View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_262 (Length: 228)
Name: NF20384_low_262
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_262 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 37749684 - 37749529
Alignment:
| Q |
58 |
cccccgtttgttacacttatatcatcaaaaccatatatatgttcacttatcatggcaccaactatatagaaagtggcatttatcatttcaatttttgatt |
157 |
Q |
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| T |
37749684 |
cccccgtttgttacacttatatcatcaaaaccatat----gttcacttatcatggcaccaactatatagaaagtggcatttatcatttcaatttttgatt |
37749589 |
T |
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| Q |
158 |
attttagtctcctgtattaaatgaaaaatcactactgttcatgctgttgagctagagagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749588 |
attttagtctcctgtattaaatgaaaaatcactactgttcatgctgttgagctagagagc |
37749529 |
T |
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