View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_268 (Length: 220)
Name: NF20384_low_268
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_268 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38152775 - 38152571
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
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| T |
38152775 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
38152676 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagtacccatttttatttttacagaaccaatccattttccttatccatcaaaataagagt |
200 |
Q |
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| T |
38152675 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagtacccatttttctttttacagaaccaatccattttccttatccatcaaaataagagt |
38152576 |
T |
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| Q |
201 |
ataat |
205 |
Q |
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|||| |
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| T |
38152575 |
ctaat |
38152571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 38140881 - 38140737
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
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| T |
38140881 |
ttttctggctacttctgtctcaaggaatggatacctatggagatggctatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
38140782 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagta |
145 |
Q |
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| T |
38140781 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaagta |
38140737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 38108425 - 38108284
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
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| T |
38108425 |
ttttctggcaactcctatctcaagggatggatacctatggagatggatatgaagtcgtttttgagaattgtccttcaactggtgagatcatcaaacaaca |
38108326 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaa |
142 |
Q |
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| T |
38108325 |
atctatgaagatgtcacatatcaaatagtagattttcagaaa |
38108284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 38089293 - 38089165
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || || |||| ||||||||||| || || ||||||| |||||| |
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| T |
38089293 |
ttttctggcaactcatgtctcaaggaatggatggctatggagatggttatgaagttgttcttaagaataatccttcaaccgcagaagtcatcagacaaca |
38089194 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaaatagt |
129 |
Q |
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|||| ||| |||||||| ||||| |||| |
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| T |
38089193 |
atctctgaagatgtcaaatatcaagtagt |
38089165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 37070534 - 37070657
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
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|||||| |||||| |||||||||||||||||| ||||||||||||| ||||||| || ||||||| ||||||||| | || |||||||||||||| |
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| T |
37070534 |
ttttctagcaacttatgtctcaaggaatggatggctatggagatggttatgaagttgttcttgagaataatccttcagtgacagaagtcatcaaacaaca |
37070633 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaa |
124 |
Q |
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|||| ||| |||||||| ||||| |
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| T |
37070634 |
atctctgaatatgtcaaatatcaa |
37070657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 38084261 - 38084120
Alignment:
| Q |
1 |
ttttctggcaactcatgtctcaaggaatggatagctatggagatggaaatgaagtcatttttgagaacaatccttcaactgccgaggtcatcaaacaaca |
100 |
Q |
| |
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|||| ||||||||| |||||||||| ||||||| | |||||||| ||||||||||||||||||| | || ||||||| || | |||||||||||||| |
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| T |
38084261 |
ttttttggcaactcctgtctcaagggatggataacatgggagatggctatgaagtcatttttgagaatagtctttcaacttcccaagtcatcaaacaaca |
38084162 |
T |
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| Q |
101 |
atctgtgacaatgtcaaaaatcaaatagtagaattgcagaaa |
142 |
Q |
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|||| | | |||||||| |||| | || ||||||| ||||| |
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| T |
38084161 |
atctttaaaaatgtcaagtatcagaaagcagaattgaagaaa |
38084120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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