View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_269 (Length: 218)

Name: NF20384_low_269
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_269
NF20384_low_269
[»] chr5 (3 HSPs)
chr5 (17-113)||(9426162-9426258)
chr5 (17-113)||(13598417-13598513)
chr5 (168-200)||(9426307-9426339)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 9426162 - 9426258
Alignment:
Q  17 cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9426162 cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc 9426258  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 13598513 - 13598417
Alignment:
Q  17 cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13598513 cacatatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc 13598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 9426307 - 9426339
Alignment:
Q  168 gaattcactacagaattgtgcactatagtatat 200  Q
    ||||||||||||||||||| |||||||||||||    
T  9426307 gaattcactacagaattgtacactatagtatat 9426339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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