View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_273 (Length: 215)
Name: NF20384_low_273
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_273 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 44577670 - 44577482
Alignment:
| Q |
9 |
gagtagcaaaggatagtgatcaatataatgggctcctaggatcagagtgcgacatgaaacttcattccaaatcaaggtccaacccagtttgtgaaatttg |
108 |
Q |
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| T |
44577670 |
gagtaacaagggatagtgatcaatataatgggctcctaggatcagagtgcgacatgaaactttattccaaatcaaggtccaacccagtttgtgaaatttg |
44577571 |
T |
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| Q |
109 |
atgaagcaagcattctagttcaccattgaagtggatgaggtctatctatgagtttgagccttaaaaacctcatgagtatgtggtgttag |
197 |
Q |
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| T |
44577570 |
atgaagcaagcattctagttcaccattgaagtggatgaggtctatctatgagtttgagccttaaaaacctcatgagtatgtagtgttag |
44577482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 1743672 - 1743737
Alignment:
| Q |
76 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
141 |
Q |
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| T |
1743672 |
caaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
1743737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 2006709 - 2006644
Alignment:
| Q |
77 |
aaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtgg |
142 |
Q |
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| T |
2006709 |
aaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaagtgg |
2006644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 1498410 - 1498332
Alignment:
| Q |
75 |
ccaaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtggatgaggtctat |
153 |
Q |
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| T |
1498410 |
ccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctat |
1498332 |
T |
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