View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_28 (Length: 565)
Name: NF20384_low_28
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 31214123 - 31214664
Alignment:
| Q |
11 |
tcttgctattggtaaattaaaccaattagtgcatgtatcttttgcaaactgtaaccgtattggttccattccccgagaaattggaatgttgacaaaactt |
110 |
Q |
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| T |
31214123 |
tcttgcgattgttaaattaaaccaattagtgcatgtatcttttgcaaactgtaaccgtattggttccattccccgagaaattggaatgttgacaaaactt |
31214222 |
T |
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| Q |
111 |
ggtaaaatggatttgcaagggaacactctatctggtaccatcccagattcaattggtaacatgaccagtttaagtaaactttaccttgctaataacacaa |
210 |
Q |
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| T |
31214223 |
ggtttaatggatttgcaaaggaacactctatctggtaccatcccaaaatcaattggtaacatgactagtttaagtgaactttacctttctaataacacaa |
31214322 |
T |
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| Q |
211 |
tgttgtctggacaaatcccagcatccttgtggaacttgtcttacttgtccatgctcagccttaatgacaacaaactttctggatcactccctccttcgat |
310 |
Q |
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| T |
31214323 |
tgttgtctggacaaatcccagcatccttgtggaacttgtcttacttgtccatactctatcttgatggcaacaaattttctggatcagtccctccttcgat |
31214422 |
T |
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| Q |
311 |
ccaaaacttggccaatttggctgaccttatactttttggcaaccacttttctggacctattccttccaccattggaaacatgacaaaactatcaactttt |
410 |
Q |
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||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
31214423 |
ccaaaacttggccaatttgactgaccttatccttcatcaaaaccacttttctggacctattccttccaccattggaaacttgacaaaactatcaaattta |
31214522 |
T |
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| Q |
411 |
tacttatacacaaattatttttctggatcaattcctagttctattggaaatctaatcaatgtgttaaagctcgatttgtctgaaaacaatctttctggaa |
510 |
Q |
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| T |
31214523 |
tacttattcacaaattatttttctggatcaattcctagttctattggaaatctaatcaatgtgttaatcctcgatttgtctgaaaacaatctttctggaa |
31214622 |
T |
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| Q |
511 |
ctattccggaaacaattggaaatatgacaaagctaataatct |
552 |
Q |
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| T |
31214623 |
ctattccggaaacaattggaaatatgacaacgctaataatct |
31214664 |
T |
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