View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_281 (Length: 203)

Name: NF20384_low_281
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_281
NF20384_low_281
[»] chr4 (5 HSPs)
chr4 (1-190)||(39509472-39509661)
chr4 (18-190)||(39574389-39574561)
chr4 (18-167)||(39578922-39579071)
chr4 (18-190)||(39542554-39542726)
chr4 (1-53)||(39516540-39516592)
[»] chr8 (1 HSPs)
chr8 (23-79)||(13973328-13973384)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39509472 - 39509661
Alignment:
Q  1 ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcac 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||     
T  39509472 ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccacattacatttcccattgaaggcctatcacaaccatcatcttgtaagcat 39509571  T
Q  101 ttttccactatctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg 190  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||    
T  39509572 ttttccactttctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttcaagtatccctttg 39509661  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39574389 - 39574561
Alignment:
Q  18 ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact 117  Q
    |||||||||||||||||| |||||||||||||||||| |||||  ||||||  ||||||||||| |||| ||| |||||||| ||||||||  |||||||    
T  39574389 ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcact 39574488  T
Q  118 aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg 190  Q
    |||  |||| ||||||||| |||  |||||| |||||||||||||||||| ||| ||||| | || |||||||    
T  39574489 aaatattcttagtgagttttgattgatttgtgccttgatggaaggatcaacgatctcttcaagtatccctttg 39574561  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 39578922 - 39579071
Alignment:
Q  18 ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact 117  Q
    |||||||||||||||||| |||||||||||||||||| |||||  ||||||  |||||||||||||||  |||||||||||| |||| ||   |||||||    
T  39578922 ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacaaccacgatcttgtaagcattttttcatggtctcact 39579021  T
Q  118 aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaa 167  Q
    |||  |||||||||||||| |||  |||||| ||||||| || |||||||    
T  39579022 aaatattctaagtgagttttgattgatttgtgccttgatagagggatcaa 39579071  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39542554 - 39542726
Alignment:
Q  18 ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact 117  Q
    ||||||| |||||||||| |||||||||||||||||| |||||  ||||||  ||||| |||||||||| ||| |||||||| ||||||||  ||||  |    
T  39542554 ctctctgcagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctgtcacaaccataatcatgtaagcatttttccacagtctcgtt 39542653  T
Q  118 aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg 190  Q
    |||  |||| ||||||||| ||| ||||||  |||||||||||||||||| ||| ||||| | || |||||||    
T  39542654 aaatattcttagtgagttttgattaatttgcgccttgatggaaggatcaacgatctcttcaagtatccctttg 39542726  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39516540 - 39516592
Alignment:
Q  1 ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccaca 53  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39516540 ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccaca 39516592  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 13973328 - 13973384
Alignment:
Q  23 tgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatca 79  Q
    ||||||||||| | ||||||||| | ||| | |||||| ||||||||||||||||||    
T  13973328 tgaagctgcaatgcatattccaaattccaaagaacatctcccattgaaggcctatca 13973384  T

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