View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_282 (Length: 201)

Name: NF20384_low_282
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_282
NF20384_low_282
[»] chr6 (1 HSPs)
chr6 (18-66)||(28908908-28908956)
[»] chr4 (1 HSPs)
chr4 (67-120)||(34809798-34809851)
[»] chr2 (2 HSPs)
chr2 (18-66)||(43391009-43391057)
chr2 (120-164)||(37726464-37726508)
[»] chr5 (1 HSPs)
chr5 (18-52)||(37157880-37157914)


Alignment Details
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 28908908 - 28908956
Alignment:
Q  18 gctgaagattgtttgaactgaaaatttcatgccacagtacagcctctat 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28908908 gctgaagattgtttgaactgaaaatttcatgccacagtacagcctctat 28908956  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 34809798 - 34809851
Alignment:
Q  67 ttattttttgttttgatattccatgattggtttgtgggtctgttattgagcatg 120  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  34809798 ttattttttgttttgatattccatgaccggtttgtgggtctgttattgagcatg 34809851  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 43391009 - 43391057
Alignment:
Q  18 gctgaagattgtttgaactgaaaatttcatgccacagtacagcctctat 66  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  43391009 gctgaagattgtttgaaccgaaaatttcatgccacagtacggcctctat 43391057  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 37726508 - 37726464
Alignment:
Q  120 gcaaacatatgtagcatatgacataggatgattttgtaaaggatg 164  Q
    |||||||||||||||| || || |||||| |||||||||||||||    
T  37726508 gcaaacatatgtagcagatcacctaggataattttgtaaaggatg 37726464  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 37157880 - 37157914
Alignment:
Q  18 gctgaagattgtttgaactgaaaatttcatgccac 52  Q
    |||||||||||||||||| ||||||||||||||||    
T  37157880 gctgaagattgtttgaaccgaaaatttcatgccac 37157914  T

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