View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_29 (Length: 550)
Name: NF20384_low_29
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 296 - 544
Target Start/End: Original strand, 10241899 - 10242148
Alignment:
| Q |
296 |
agaaactgagacttcacatgctcgcaaacgaagggacaatcgatgtccacatgcttgatgcgttcatgacttataggattgagtt-gagatttgctatcg |
394 |
Q |
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| T |
10241899 |
agaaactgagacttcacatgctcgcaaatgaagggacaatcgatgtccacatgcttgatgcgttcatgacttataggatcgagtttgagatttgctatcg |
10241998 |
T |
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| Q |
395 |
caatacgtcatgaccgaagacatgggaccttaaaaactcgaagaatgagaaagattgggctgtttcttagatttccatgatatctaggtttagattggtt |
494 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10241999 |
caaaatgtcatgaccgaagacatgggaccttaaaaactcgaagaatgagaaagattgggctgtttcttagatttccatgatatctaggtttagattggtt |
10242098 |
T |
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| Q |
495 |
tttattcttgctcatgtcctcacaaaccacttaggtaaaatattcttcga |
544 |
Q |
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| T |
10242099 |
tttattcttgctcatgtcctcacaaaccacttaggtacaattttcttcga |
10242148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 10241158 - 10241367
Alignment:
| Q |
17 |
agctttcgggtcaactctttaaaagcatcaatgtaatgtcaagataatcatgtactaattaacaatgatgaagcttgagtcaatctcaatgctttatt-- |
114 |
Q |
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| T |
10241158 |
agctttcgggtcaactctttaaaagcatcaatgtaatgtcaagataatcatgtactaa----caatgatgaagcttgagtcaatctcaatgctttatttt |
10241253 |
T |
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| Q |
115 |
---ctacatggatcttgatatcttatatagtatagtctataactagtttaggcattcaaacgaacatattaaaatagccccacattgatagttttaaaaa |
211 |
Q |
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| T |
10241254 |
attctacatgaatcttgatatcttatttagtatactcta--actagtttaggaattcaaacgaacatattaaaatagccccacattgatagttttaaaaa |
10241351 |
T |
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| Q |
212 |
caatagaaagaatgat |
227 |
Q |
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|||||||||||||||| |
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| T |
10241352 |
caatagaaagaatgat |
10241367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 115 - 283
Target Start/End: Original strand, 10253453 - 10253618
Alignment:
| Q |
115 |
ctacatggatcttgatatcttatatagtatagtctataactagtttaggcattcaaacgaacatattaaaatagccccacattgatagttttaaaaacaa |
214 |
Q |
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||||||||||||||||| |||||||||||| ||| | ||||| | |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |
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| T |
10253453 |
ctacatggatcttgatagcttatatagtatgctctcga--tagttaaagcattcaaaccaacatattaaaataatcccacattgatagttttaaaa-caa |
10253549 |
T |
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| Q |
215 |
tagaaagaatgatttatttataaaacttccgtccatctcatttgtttattccatcgtgctagtggtttt |
283 |
Q |
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| T |
10253550 |
tagagagaatgattcatctataaaactgcaggccatctcatttgttgattccatcgtgctagtggtttt |
10253618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 10243693 - 10243750
Alignment:
| Q |
154 |
ctagtttaggcattcaaacgaacatattaaaatagccccacattgatagttttaaaaa |
211 |
Q |
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| T |
10243693 |
ctagtttaagcattcaaacgaacatataaaaatagtccaacatcgagagttttaaaaa |
10243750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 10266225 - 10266297
Alignment:
| Q |
296 |
agaaactgagacttcacatgctcgcaaacgaagggacaatcgatgtccacatgcttgatgcgttcatgactta |
368 |
Q |
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| T |
10266225 |
agaaattgaaacttcacattctcacaaatgaagggacaatcgatttccacatgctaggagagttcatgactta |
10266297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 10252923 - 10252955
Alignment:
| Q |
81 |
atgatgaagcttgagtcaatctcaatgctttat |
113 |
Q |
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| T |
10252923 |
atgatgaggcttgagtcaatctcaatgctttat |
10252955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 10265544 - 10265576
Alignment:
| Q |
81 |
atgatgaagcttgagtcaatctcaatgctttat |
113 |
Q |
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| T |
10265544 |
atgatgaggcttgagtcaatctcaatgctttat |
10265576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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