View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_39 (Length: 512)

Name: NF20384_low_39
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_39
NF20384_low_39
[»] chr5 (6 HSPs)
chr5 (1-512)||(41722702-41723214)
chr5 (179-512)||(41718154-41718488)
chr5 (2-187)||(34359482-34359667)
chr5 (413-512)||(34352226-34352326)
chr5 (413-512)||(34359934-34360034)
chr5 (413-512)||(29585539-29585640)
[»] chr4 (15 HSPs)
chr4 (1-186)||(48697661-48697846)
chr4 (1-186)||(30946023-30946208)
chr4 (2-196)||(42270196-42270390)
chr4 (345-512)||(48702060-48702228)
chr4 (345-512)||(48697371-48697539)
chr4 (414-512)||(24520264-24520363)
chr4 (415-512)||(42265883-42265981)
chr4 (415-512)||(42270602-42270700)
chr4 (345-443)||(30945803-30945901)
chr4 (345-435)||(30950517-30950607)
chr4 (468-512)||(10427323-10427367)
chr4 (468-512)||(30945717-30945761)
chr4 (468-512)||(30950423-30950467)
chr4 (8-93)||(2003182-2003267)
chr4 (229-322)||(48781266-48781360)
[»] chr3 (9 HSPs)
chr3 (2-196)||(54545438-54545632)
chr3 (2-199)||(5819102-5819299)
chr3 (413-512)||(5818752-5818852)
chr3 (414-512)||(5823514-5823613)
chr3 (345-499)||(2817502-2817658)
chr3 (468-512)||(24671249-24671293)
chr3 (468-511)||(4579134-4579177)
chr3 (459-512)||(54545906-54545960)
chr3 (152-189)||(42589352-42589389)
[»] chr6 (14 HSPs)
chr6 (2-199)||(26976720-26976917)
chr6 (2-196)||(27874539-27874733)
chr6 (1-184)||(18967360-18967543)
chr6 (413-512)||(26976370-26976470)
chr6 (414-512)||(1234680-1234779)
chr6 (415-512)||(27874229-27874327)
chr6 (345-443)||(27879036-27879134)
chr6 (71-187)||(21966493-21966604)
chr6 (127-187)||(30968569-30968629)
chr6 (468-512)||(27878950-27878994)
chr6 (152-189)||(1472341-1472378)
chr6 (8-93)||(1472398-1472483)
chr6 (458-499)||(6174292-6174333)
chr6 (468-512)||(18967920-18967964)
[»] chr8 (5 HSPs)
chr8 (2-196)||(9439921-9440115)
chr8 (414-512)||(9439611-9439710)
chr8 (414-512)||(9444331-9444430)
chr8 (152-189)||(24594367-24594404)
chr8 (8-93)||(24594424-24594509)
[»] chr2 (7 HSPs)
chr2 (2-188)||(829772-829958)
chr2 (345-512)||(5198894-5199062)
chr2 (8-188)||(28715370-28715550)
chr2 (9-189)||(13840763-13840947)
chr2 (459-512)||(830209-830263)
chr2 (459-512)||(825553-825607)
chr2 (472-512)||(30397139-30397179)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-184)||(27877-28060)
scaffold0074 (468-512)||(27456-27500)
[»] chr7 (5 HSPs)
chr7 (1-184)||(2323956-2324139)
chr7 (1-191)||(22510209-22510398)
chr7 (468-512)||(16183861-16183905)
chr7 (8-93)||(7504696-7504781)
chr7 (152-189)||(7504639-7504676)
[»] chr1 (2 HSPs)
chr1 (468-512)||(46191274-46191318)
chr1 (85-186)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 41722702 - 41723214
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41722702 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc 41722801  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722802 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacata 41722901  T
Q  201 agccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttaccattcagattttcggtgccaaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41722902 agccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttaccattcagattttcggtgccaaca 41723001  T
Q  301 ttgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtccctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723002 ttgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtccctt 41723101  T
Q  401 gcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcct 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41723102 gcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcct 41723201  T
Q  500 gtgaggtttctcc 512  Q
    |||||||||||||    
T  41723202 gtgaggtttctcc 41723214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 179 - 512
Target Start/End: Original strand, 41718154 - 41718488
Alignment:
Q  179 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41718154 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc 41718253  T
Q  279 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718254 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 41718353  T
Q  379 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatata 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41718354 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatata 41718453  T
Q  478 gagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||    
T  41718454 gagaggaaaaatagtttctcctgtgaggtttctcc 41718488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 34359482 - 34359667
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  34359482 gtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcc 34359581  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat 187  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||    
T  34359582 tattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaacat 34359667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 34352226 - 34352326
Alignment:
Q  413 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  34352226 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc 34352325  T
Q  512 c 512  Q
    |    
T  34352326 c 34352326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 34359934 - 34360034
Alignment:
Q  413 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  34359934 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc 34360033  T
Q  512 c 512  Q
    |    
T  34360034 c 34360034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 29585640 - 29585539
Alignment:
Q  413 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgaga-gaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 510  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  29585640 tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 29585541  T
Q  511 cc 512  Q
    ||    
T  29585540 cc 29585539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 48697846 - 48697661
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48697846 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc 48697747  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca 186  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  48697746 ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca 48697661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30946208 - 30946023
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30946208 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc 30946109  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca 186  Q
    ||||||||||||||||||| | ||| || |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  30946108 ctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaaca 30946023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 42270196 - 42270390
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||||    
T  42270196 gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc 42270295  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 196  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  42270296 tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 42270390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 345 - 512
Target Start/End: Complemental strand, 48702228 - 48702060
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 444  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702228 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 48702129  T
Q  445 taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48702128 taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 48702060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 345 - 512
Target Start/End: Complemental strand, 48697539 - 48697371
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 444  Q
    ||||||| || |||||| ||||||||| || |  |  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  48697539 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag 48697440  T
Q  445 taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48697439 taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 48697371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 24520363 - 24520264
Alignment:
Q  414 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 24520264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 415 - 512
Target Start/End: Original strand, 42265883 - 42265981
Alignment:
Q  415 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42265883 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42265981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 415 - 512
Target Start/End: Original strand, 42270602 - 42270700
Alignment:
Q  415 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42270602 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42270700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 443  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  30945901 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 30945803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac 435  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30950607 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac 30950517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 10427323 - 10427367
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  10427323 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc 10427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 30945761 - 30945717
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  30945761 gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 30945717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 30950467 - 30950423
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  30950467 gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 30950423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 2003182 - 2003267
Alignment:
Q  8 atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc 93  Q
    |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |||||   ||| || |||  |||||||||||||||    
T  2003182 atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatcctc 2003267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
Q  229 ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc 322  Q
    ||||||||||||||||| |  |||||||| |||||||  ||||| ||||| |||| | ||||| |||||  | ||| |||||||||||||||||||    
T  48781266 ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc 48781360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 54545438 - 54545632
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  54545438 gtggatatgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc 54545537  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 196  Q
    |||||||||| ||||||||| ||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  54545538 tattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 54545632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 5819299 - 5819102
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  5819299 gtggatatgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcc 5819200  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 199  Q
    |||||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5819199 tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaacatgtgtgaacacat 5819102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 5818852 - 5818752
Alignment:
Q  413 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5818852 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5818753  T
Q  512 c 512  Q
    |    
T  5818752 c 5818752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 5823613 - 5823514
Alignment:
Q  414 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 5823514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 499
Target Start/End: Complemental strand, 2817658 - 2817502
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 444  Q
    ||||||| || |||||| ||||||||| || |  |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817658 ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 2817559  T
Q  445 taaagcttgttta-gatagtgagag-aaaaatatagagaggaaaaatagtttctcct 499  Q
    |||| |||||||| | || |||||| |||||||||||||||||||||||||||||||    
T  2817558 taaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct 2817502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 24671293 - 24671249
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  24671293 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc 24671249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 4579134 - 4579177
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 511  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  4579134 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctc 4579177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 459 - 512
Target Start/End: Original strand, 54545906 - 54545960
Alignment:
Q  459 atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  54545906 atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 54545960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
Q  152 tcacaaaagtgactttaagtgggagattgtgaacatgt 189  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42589352 tcacaaaagtgactttaagtgggagattgtgaagatgt 42589389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 26976917 - 26976720
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26976917 gtggatatgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc 26976818  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 199  Q
    |||||||||||||||||||| ||||||||| ||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976817 tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 26976720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 27874733 - 27874539
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||||    
T  27874733 gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc 27874634  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 196  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  27874633 tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 27874539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18967360 - 18967543
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||  |||| |||||| |||||||||||||||| ||||||    
T  18967360 tgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc 18967459  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 184  Q
    |||||| |||| |||||||  || | || |||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  18967460 ctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa 18967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 26976470 - 26976370
Alignment:
Q  413 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26976470 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 26976371  T
Q  512 c 512  Q
    |    
T  26976370 c 26976370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 512
Target Start/End: Original strand, 1234680 - 1234779
Alignment:
Q  414 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 1234779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 415 - 512
Target Start/End: Complemental strand, 27874327 - 27874229
Alignment:
Q  415 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  27874327 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 27874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 443  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27879134 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 27879036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
Q  71 aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa 169  Q
    ||||||||||||||||||||||||||||      | ||||||||||||   |||||||||||||||||||||||||| || || ||||||||| || |||    
T  21966493 aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa 21966586  T
Q  170 gtgggagattgtgaacat 187  Q
    |||||| |||||||||||    
T  21966587 gtgggatattgtgaacat 21966604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
Q  127 ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat 187  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  30968569 ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat 30968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 27878994 - 27878950
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  27878994 gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 27878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
Q  152 tcacaaaagtgactttaagtgggagattgtgaacatgt 189  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  1472378 tcacaaaagtgactttaagtgggagattgtgaagatgt 1472341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1472483 - 1472398
Alignment:
Q  8 atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc 93  Q
    |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |||||  |||| || |||  |||||||||||||||    
T  1472483 atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtcgatcctc 1472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 6174333 - 6174292
Alignment:
Q  458 gatagtgagagaaaaatatagagaggaaaaatagtttctcct 499  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  6174333 gatagtgagagaaaaatatagaaaggaaatatagtttctcct 6174292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 18967920 - 18967964
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||    
T  18967920 gaaaaatataaagaggaaatatagtttctcttgtgaggtttctcc 18967964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 9440115 - 9439921
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||    
T  9440115 gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcc 9440016  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 196  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9440015 tattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 9439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 9439710 - 9439611
Alignment:
Q  414 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9439710 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 9439611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 9444430 - 9444331
Alignment:
Q  414 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9444430 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 9444331  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
Q  152 tcacaaaagtgactttaagtgggagattgtgaacatgt 189  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  24594404 tcacaaaagtgactttaagtgggagattgtgaagatgt 24594367  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 24594509 - 24594424
Alignment:
Q  8 atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc 93  Q
    |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |||||  |||| || |||  ||||||| |||||||    
T  24594509 atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc 24594424  T

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Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 829772 - 829958
Alignment:
Q  2 gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc 101  Q
    ||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  829772 gtggatatgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc 829871  T
Q  102 tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg 188  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||  |||||||||||| ||||||||||||    
T  829872 tattggaaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaacatg 829958  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 345 - 512
Target Start/End: Complemental strand, 5199062 - 5198894
Alignment:
Q  345 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 444  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199062 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 5198963  T
Q  445 taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5198962 taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 5198894  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 28715370 - 28715550
Alignment:
Q  8 atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattgg 107  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||  |||| |||||| ||| |||||||||||| ||||||||||||     
T  28715370 atgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattga 28715469  T
Q  108 aaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg 188  Q
    ||| |||||||| | ||||||| |||||||||||||||| |  || | ||| ||  |||||||||||||||||||||||||    
T  28715470 aaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaacatg 28715550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 13840947 - 13840763
Alignment:
Q  9 tgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcct----cgtatggcctat 104  Q
    ||||||||||||| || | |||||| ||| | |||||  ||||||| ||||||||  || |||||||||||||| |||||||||     ||||| |||||    
T  13840947 tgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctat 13840848  T
Q  105 tggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgt 189  Q
    ||||||| |||||||  |||||||||||| ||||| ||||| |||||||||||||||   |||||||| |||||||| |||||||    
T  13840847 tggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaacatgt 13840763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 459 - 512
Target Start/End: Original strand, 830209 - 830263
Alignment:
Q  459 atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  830209 atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc 830263  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 512
Target Start/End: Original strand, 825553 - 825607
Alignment:
Q  459 atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    |||||||||| |||||||||||||| |||| |||||||||||| |||||||||||    
T  825553 atagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcc 825607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Complemental strand, 30397179 - 30397139
Alignment:
Q  472 aatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  30397179 aatatagagaggaaatatagtttctcctgtgagatttctcc 30397139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28060 - 27877
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||| || |||||  |||| |||||| |||||||||||||||| ||||||    
T  28060 tgtggacatgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc 27961  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 184  Q
    |||||||||||||||||||  || | ||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||    
T  27960 ctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa 27877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 27500 - 27456
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  27500 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc 27456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2324139 - 2323956
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc 100  Q
    |||||| ||||||||||| |||||||||||||  ||||||||||| ||||||||||| |||||  ||   |||||| ||||||||||||| ||||||||     
T  2324139 tgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatcatcgtatgga 2324040  T
Q  101 ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 184  Q
    |||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2324039 ctattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa 2323956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22510209 - 22510398
Alignment:
Q  1 tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcgatcctcgtatgg 99  Q
    |||||| |||| ||||||||| ||  ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| ||||   | |||    
T  22510209 tgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaatccctctgtgg 22510308  T
Q  100 cctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgt 191  Q
    ||||||  |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| |  |||||| |  ||||| ||||||||||||    
T  22510309 cctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatgtgt 22510398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 16183905 - 16183861
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  16183905 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc 16183861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 7504781 - 7504696
Alignment:
Q  8 atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc 93  Q
    ||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||||| || |||  |||||||||||||||    
T  7504781 atgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatcctc 7504696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
Q  152 tcacaaaagtgactttaagtgggagattgtgaacatgt 189  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  7504676 tcacaaaagtaactttaagtgggagattgtgaagatgt 7504639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 46191274 - 46191318
Alignment:
Q  468 gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  46191274 gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc 46191318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
Q  85 tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 184  Q
    ||||| ||||| ||| ||||| ||||| |||||||  || | ||||||| ||||| |||||| |||||| |||||||   ||||| ||| ||||||||||    
T  41413523 tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa 41413424  T
Q  185 ca 186  Q
    ||    
T  41413423 ca 41413422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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