View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_41 (Length: 510)
Name: NF20384_low_41
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 1876211 - 1876679
Alignment:
| Q |
13 |
aatattgagcttgaaatcaaaattgtccagtcctaactgaattaccgacactctattgattgcatgaatgcatgggatttgtgatgacaagccaaatccc |
112 |
Q |
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| T |
1876211 |
aatattgagcttgaaatcaaaattgtccagtcctaactgaattaccgacactgtattgattgcatgaatgtgtgggatttgtgatgacaagccaaatccc |
1876310 |
T |
|
| Q |
113 |
cataaaagtacctagcaaatgtagctctgaaaagtcttcaataaaatgtttgttgttattagttatctattttagtattgtaaaagtggctgcaacaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1876311 |
cataaaagtacctagcaaatgtagctctgaaaagtcttcaataaaatgtttgttgttattagttatctattttagtattgtaaaagtggctgcaacaata |
1876410 |
T |
|
| Q |
213 |
acataatagttcttgaggtctttgcaattgcaatgcaattaaaattggagtgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgt |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1876411 |
acataatagttcttgaggtctttgca-----------attaaaattggagcgcagtttgttgtcgacttatctttcattttggtctacttttttatgtgt |
1876499 |
T |
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| Q |
313 |
attattttaaagattgatttgtattgaaattgcgaactacattagtttgtaatgtcctgcaatattaaaaacacgctaatgcaatgtatctgcaaccgca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1876500 |
attattttaaagattgatttgtattgaaattgcgaactacattagtttgtaatgtcctgcaatattaaaaacacgctaatgcaatgtatctgcaaccgca |
1876599 |
T |
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| Q |
413 |
atttaaaactatgatatattcggaaatgttttatttatcaattttccctttgttagtaatgtctacagttggtaggaatt |
492 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1876600 |
atttaaaactatgatatattcggaaatgttctatttatcaattttccctttgttagtaatgtctacagttggtaggaatt |
1876679 |
T |
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