View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_42 (Length: 508)
Name: NF20384_low_42
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 13919073 - 13919549
Alignment:
| Q |
19 |
catcggttatgcaattaaatcaagannnnnnnnaataaaaggtaatgtaattattatttggtcaaaacttctatttatggagtctttagtagtgtgttag |
118 |
Q |
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| T |
13919073 |
catcggttatgcaattaaatcaagattttttttaataaaaggtaatgtaattattatttggtcaaaacttctatttatggagtctttagtagtgtgttag |
13919172 |
T |
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| Q |
119 |
gggcattagttagcaagatccttatnnnnnnntaggacattttgacagattttttgtcataagtgtttgtgcatggccgatgttttagtgcaacacgttg |
218 |
Q |
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| T |
13919173 |
gggcattagttagcaagatccttataaaaaaataggacattttgacagattttttgtcataagtgtttgtgcatggccgatgttttagtgcaacacgttg |
13919272 |
T |
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| Q |
219 |
acgacatatgggaagtctgataacaagctacttaaatggtttctctctcaaaagaagttatttaacatcatgtaatttattaggccacatatcagatatt |
318 |
Q |
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| T |
13919273 |
acgacatatgggaagtctgataacaagctacttaaatggtttctctctcaaaagaagttatttaacatcatgtaatttattaggccacatatcagatatt |
13919372 |
T |
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| Q |
319 |
aaacttaatctgacattaaacataatctatgtatctctataatagggatttgtatttagtctttgtatcatgatactatttagtcattgttgatgatatt |
418 |
Q |
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| T |
13919373 |
aaacttaatctgacattaaacataatctatgtatctctataatagggatttgtatttagtctttgtatcatgatactatttagtcattgttgatgatatt |
13919472 |
T |
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| Q |
419 |
cggaattcatattgatctctcttccttttacctatgccactatttagtcattgttgataatactcagagctcatatt |
495 |
Q |
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| T |
13919473 |
cggaattcatattgatctctcttccttttacctatgccactatttagtcattgttgataatactcagagctcatatt |
13919549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 168 - 329
Target Start/End: Complemental strand, 14318465 - 14318310
Alignment:
| Q |
168 |
ttttttgtcataagtgtttgtgcatggccgatgttttagtgcaacacgttgacgacatatgggaagtctgataacaagctacttaaatggtttctctctc |
267 |
Q |
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| T |
14318465 |
ttttttgccataagtgtttgtgcatagccaatgttgtagtgcaatacattgacgacaaatgagaagtatggtagcaagctacttaagtgatttctt---- |
14318370 |
T |
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| Q |
268 |
aaaagaagttatttaacatcatgtaatttattaggccacatatcagatattaaacttaatct |
329 |
Q |
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| T |
14318369 |
aaaagaggtgatttaacatcgtgtgatttattaggtcacat--cagatattaaacctaatct |
14318310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 13919511 - 13919570
Alignment:
| Q |
393 |
actatttagtcattgttgatgatattcggaattcatattgatctctcttccttttaccta |
452 |
Q |
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| T |
13919511 |
actatttagtcattgttgataatactcagagctcatattgttctctcttccttttaccta |
13919570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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