View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_44 (Length: 504)

Name: NF20384_low_44
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_44
NF20384_low_44
[»] chr4 (15 HSPs)
chr4 (1-273)||(52986840-52987111)
chr4 (377-496)||(52986621-52986736)
chr4 (18-273)||(55659810-55660053)
chr4 (379-484)||(54626843-54626946)
chr4 (203-273)||(54862634-54862704)
chr4 (191-272)||(55634843-55634924)
chr4 (379-484)||(54862405-54862508)
chr4 (379-448)||(51315717-51315786)
chr4 (22-120)||(55634683-55634783)
chr4 (191-245)||(50192566-50192620)
chr4 (24-124)||(54862776-54862878)
chr4 (377-468)||(55635043-55635132)
chr4 (395-448)||(50192334-50192387)
chr4 (398-446)||(3672106-3672154)
chr4 (191-246)||(54626642-54626697)
[»] chr3 (2 HSPs)
chr3 (191-272)||(16437813-16437894)
chr3 (22-120)||(16437653-16437753)
[»] chr2 (2 HSPs)
chr2 (186-273)||(13401034-13401121)
chr2 (379-446)||(13401227-13401294)
[»] chr8 (2 HSPs)
chr8 (398-446)||(9889346-9889394)
chr8 (206-268)||(9889162-9889224)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 52987111 - 52986840
Alignment:
Q  1 ttggtgtttgcctagccctatggtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaaccagtaactgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52987111 ttggtgtttgcctagccctatggtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaac-agtaactgttga 52987013  T
Q  101 ttttctcatgtttttaatgcattacattactactatgttgctttcattctaactgttaaagcgtttgatgtttgtgtgtagaaaaaagctctccgattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987012 ttttctcatgtttttaatgcattacattactactatgttgctttcattctaactgttaaagcgtttgatgtttgtgtgtagaaaaaagctctccgattga 52986913  T
Q  201 gcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 273  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986912 gcaagttattcaatctgctgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 52986840  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 377 - 496
Target Start/End: Complemental strand, 52986736 - 52986621
Alignment:
Q  377 aagctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactc 476  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        
T  52986736 aagctacttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaagct---- 52986641  T
Q  477 agttcacctcatgatgatgt 496  Q
    ||||||||||||||||||||    
T  52986640 agttcacctcatgatgatgt 52986621  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 55660053 - 55659810
Alignment:
Q  18 ctatggtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaaccagtaactgttgattttct--catgttttt 115  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||  ||  |||| | |||| | || || ||||| | ||||||||||  |||||||||    
T  55660053 ctatggtctggtcggatgataacagccaacagttggaagcaactacccactttcgaaagcttatctccacaagtaattattgattttctttcatgttttt 55659954  T
Q  116 aatgcattacattactactatgttgctttcattctaactgttaaagcgtttgatgtttgtgtgtagaaaaaagctctccgattgagcaagttattcaatc 215  Q
    ||||||||||        |||||||||||||||||||||| |     ||||| | | | | ||||| | | | | ||| |||||| || |||||||||||    
T  55659953 aatgcattac--------tatgttgctttcattctaactgct-----gtttgttttgt-tctgtagtacataaccctcagattgatcatgttattcaatc 55659868  T
Q  216 tggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 273  Q
    ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  55659867 tggcgttgttcctcgttttgttgaatttctatttagggacgattttcctcaacttcag 55659810  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 484
Target Start/End: Original strand, 54626843 - 54626946
Alignment:
Q  379 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactcag 478  Q
    ||||||| ||||||  ||||||||| ||||||||||||| ||||||||||||||||| |||||||||  | |||||||||||||||||||| || || ||    
T  54626843 gctgcttgggcactcacaaacatagcagctggaacttctgagaacactaaggtggtagttgatcatg--gcgcagtaccaatgtttgtcaagcttcttag 54626940  T
Q  479 ttcacc 484  Q
    ||||||    
T  54626941 ttcacc 54626946  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 54862704 - 54862634
Alignment:
Q  203 aagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 273  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||||||||    
T  54862704 aagttattcaatctggtgttgttcctcgttttgttcaatttctatatagggaggattttcctcaacttcag 54862634  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 55634843 - 55634924
Alignment:
Q  191 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttca 272  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||| |||| ||||||    
T  55634843 ctccgattgaccaagttattcaatctggtgttgtttctcgttttgttcaatttctattaagggacaattttcctcgacttca 55634924  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 484
Target Start/End: Complemental strand, 54862508 - 54862405
Alignment:
Q  379 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtcaatctactcag 478  Q
    ||||||| ||||||  ||||||||| | ||||||||||  |||||||||||||||||||||||||||  | ||||||||||| ||| |||| ||||| ||    
T  54862508 gctgcttgggcactcacaaacatagcatctggaacttcggagaacactaaggtggtaattgatcatg--gggcagtaccaatatttatcaagctacttag 54862411  T
Q  479 ttcacc 484  Q
    ||||||    
T  54862410 ttcacc 54862405  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 51315717 - 51315786
Alignment:
Q  379 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggag 448  Q
    |||||||  |||||| ||||||||| ||||||||||||| ||||||||||| || |||||||||||||||    
T  51315717 gctgctttcgcacttacaaacatagcagctggaacttctgagaacactaagttgctaattgatcatggag 51315786  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 55634683 - 55634783
Alignment:
Q  22 ggtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaaccagtaactgttgattttc--tcatgtttttaatg 119  Q
    ||||||||| |||||||||| ||||||||||||||||||||  ||| |||||| ||||||||  |   |||||| |||||||||  ||||||||||||||    
T  55634683 ggtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatg 55634782  T
Q  120 c 120  Q
    |    
T  55634783 c 55634783  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 50192620 - 50192566
Alignment:
Q  191 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttct 245  Q
    ||||||||||| | |||||||||||||||||||| || |||||||||||||||||    
T  50192620 ctccgattgaggaggttattcaatctggtgttgtgccacgttttgttgagtttct 50192566  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 54862878 - 54862776
Alignment:
Q  24 tctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaaccagtaactgttgattt--tctcatgtttttaatgca 121  Q
    ||||||| ||||||||||  |||||||| |||||||||| | || |||||| || |||||| | | ||||||||||||||  | | ||||||||||||||    
T  54862878 tctggtccgatgataacagtcaacaactcgaagcaactacggaatttcggaagcgtctttccatcggtaactgttgattttatttgatgtttttaatgca 54862779  T
Q  122 tta 124  Q
    |||    
T  54862778 tta 54862776  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 468
Target Start/End: Original strand, 55635043 - 55635132
Alignment:
Q  377 aagctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggagagcagtaccaatgtttgtca 468  Q
    ||||||||| ||||||  ||||||||| | | ||||||||| |||||| |||||||||||||||||| || || || |||||||||||||||    
T  55635043 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgg-ga-caataccaatgtttgtca 55635132  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 50192387 - 50192334
Alignment:
Q  395 caaacatagtagctggaacttctaagaacactaaggtggtaattgatcatggag 448  Q
    ||||||||| | ||||||||||| |||||||||||||||| |||||||| ||||    
T  50192387 caaacatagcatctggaacttctgagaacactaaggtggtgattgatcacggag 50192334  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 3672154 - 3672106
Alignment:
Q  398 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 446  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  3672154 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 3672106  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 54626642 - 54626697
Alignment:
Q  191 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttcta 246  Q
    ||||||||||  | ||||||||||||||||||||||| ||||||||| | ||||||    
T  54626642 ctccgattgatgatgttattcaatctggtgttgttccccgttttgttcaatttcta 54626697  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 16437813 - 16437894
Alignment:
Q  191 ctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttca 272  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||| |||| ||||||    
T  16437813 ctccgattgaccaagttattcaatctggtgttgtttctcgttttgttcaatttctattaagggacaattttcctcgacttca 16437894  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 16437653 - 16437753
Alignment:
Q  22 ggtctggtcggatgataacatccaacaactggaagcaactaagcaaattcggaggcttctttcaaccagtaactgttgattttc--tcatgtttttaatg 119  Q
    ||||||||| |||||||||| ||||||||||||||||||||  ||| |||||| ||||||||  |   |||||| |||||||||  ||||||||||||||    
T  16437653 ggtctggtccgatgataacaaccaacaactggaagcaactactcaatttcggatgcttctttgcaattgtaactattgattttctttcatgtttttaatg 16437752  T
Q  120 c 120  Q
    |    
T  16437753 c 16437753  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 13401034 - 13401121
Alignment:
Q  186 aagctctccgattgagcaagttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaacttcag 273  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || |||||| |||||||| || |||| ||||| || |||||||||    
T  13401034 aagccctccgattgaggaagttattcaatctggtgttgttccccgctttgttcagtttctagttcgggaggattttccccaacttcag 13401121  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 446
Target Start/End: Original strand, 13401227 - 13401294
Alignment:
Q  379 gctgcttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 446  Q
    ||||||| ||| ||| ||||||||| | | ||||||||| |||| |||||||||||||||||||||||    
T  13401227 gctgcttgggctcttacaaacatagcatccggaacttctgagaatactaaggtggtaattgatcatgg 13401294  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 9889346 - 9889394
Alignment:
Q  398 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 446  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  9889346 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 9889394  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 9889162 - 9889224
Alignment:
Q  206 ttattcaatctggtgttgttcctcgttttgttgagtttctatttagggacgatttacctcaac 268  Q
    |||||||||||| || |||||||||| ||||||| |||||| |||  |||||||| |||||||    
T  9889162 ttattcaatctgatgctgttcctcgtcttgttgaatttctagttattgacgattttcctcaac 9889224  T

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