View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_48 (Length: 496)
Name: NF20384_low_48
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Original strand, 18764677 - 18765145
Alignment:
| Q |
16 |
tgttggccaacacagtaagaggctgacaattttaaccccccttccctttcatccataaaatctaacatatcacgagttttcgatcaatatcttttgttgt |
115 |
Q |
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| T |
18764677 |
tgttggccaacacagtaagaggctggcaattttaaccccccttccctttcatccataaaatctaacatatcacgagttttcgatcaatatcttttgttgt |
18764776 |
T |
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| Q |
116 |
tgcttcagagtcgttggattcaggttcacatactattgtatcccgatccaacaactctgctgtcgcaacaatgaatctaatatagctgaataactgactt |
215 |
Q |
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| T |
18764777 |
tgcttcagagtcgttggattcaggttcacatactattgtatcccaatccaacaactcttcagtcgcaacaatgaatcta-----gccgaataactgactt |
18764871 |
T |
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| Q |
216 |
gtttgcatttcataacatcttgcagaccattgcaaaatctgtagcagactggttttatgacagaaggcctttccatcagatagattgtccttacccttgc |
315 |
Q |
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| T |
18764872 |
gtttgcattgcataacatcttgcagaccattgcaaaatctgtagcagactggttttatgacagaaggcctttccatcagatagattgtccttacccttgc |
18764971 |
T |
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| Q |
316 |
aatccaacatgtcacacccacgttaatcaagatgcagaactatagattcgtttcatcagaatcattccatacacataataaatatatatttcatcattgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18764972 |
aatccaacatgtcacacccacgttaatcaagatgcagaactatagatttgtttcatcagaatcaatccatacacataataaatatatatttcatcattgt |
18765071 |
T |
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| Q |
416 |
tgcaaaaacacaataaaatgagaaagatatatgattgttacagatttatcaagctatcaataaatcttcatttc |
489 |
Q |
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| T |
18765072 |
tgcaaaaacataataaaatgagaaagatatatgattgttacagatttatcaagctatcaataaatcttcatttc |
18765145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 10796177 - 10796078
Alignment:
| Q |
221 |
catttcataacatcttgcagaccattgcaaaatctgtagcagactggttttatgacagaaggcctttccatcagatagattgtccttacccttgcaatcc |
320 |
Q |
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|||| |||||||||||||||| |||||||||| | |||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||| |
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| T |
10796177 |
cattgcataacatcttgcagagcattgcaaaagccgtagcagactggttttatgaaagaaagctattccataagatagattgtccttacccttgcaatcc |
10796078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 30389349 - 30389430
Alignment:
| Q |
236 |
tgcagaccattgcaaaatctgtagcagactggttttatgacagaaggcctttccatcagatagattgtccttacccttgcaa |
317 |
Q |
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||||||| || ||||| |||||| ||| |||| |||||| ||||| |||| || ||||||||||||||||| |||||||| |
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| T |
30389349 |
tgcagacaatagcaaaggctgtaggagattggtattatgatagaagcacttttcagcagatagattgtccttatccttgcaa |
30389430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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