View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_49 (Length: 492)
Name: NF20384_low_49
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_49 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 52714105 - 52713624
Alignment:
| Q |
11 |
gagatgaaaagcccaacgcccattcgttgtaacgatgtgatgccacggtggtggccggtaaacttacggagaaatgggattatgaatctctcgtagaaag |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52714105 |
gagatgaaaagcccaacacccattcgttgtaacgatgtgatgccacggtggtggccggtaaacttacggagaaatgggattatgaatctctcgtagaaag |
52714006 |
T |
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| Q |
111 |
gtacaagtatgaggccgttgatggcaccaaagacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgact |
210 |
Q |
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| T |
52714005 |
gtacaagtatgaggccgttgatggcaccaaagacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgact |
52713906 |
T |
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| Q |
211 |
taaaaagaaggttgacatttgagcgaaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgt |
310 |
Q |
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| T |
52713905 |
taaaaagaaggttgacatttgagcgaaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgt |
52713806 |
T |
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| Q |
311 |
gtcactgtgcatacactccatctgttactgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttat |
410 |
Q |
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| T |
52713805 |
gtcactgtgcatacactccatctgttgctgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttat |
52713706 |
T |
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| Q |
411 |
tctcatataccaagattaaattaatcaacatcacgcttagttatgtgatttcgatcataaattaagcttagtttataacact |
492 |
Q |
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| T |
52713705 |
tctcatataccaagattaaattaatcaacatcacgcttagttatgtgatttcgatcataaaataagcttagtttataacact |
52713624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 52723127 - 52722660
Alignment:
| Q |
11 |
gagatgaaaagcccaacgcccattcgttgtaacgatgtgatgccacggtggtggccggtaaacttacggagaaatgggattatgaatctctcgtagaaag |
110 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||| || |
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| T |
52723127 |
gagataaaaagcccaacacccattcgttgtaacgatgtgatgccacggtgatggcctgtaaatttgcggagaaatgggattattaatctctcgtagagag |
52723028 |
T |
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| Q |
111 |
gtacaagtatgaggccgttgatggcaccaaagacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgact |
210 |
Q |
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| T |
52723027 |
gtacaagtatgaggccgttgatggcagcaaagacagggacagaacctgttgggatttcgaacttgtttcctagttttctattcatgatgctggcttgact |
52722928 |
T |
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| Q |
211 |
taaaaagaaggttgacatttgagcgaaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgt |
310 |
Q |
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| T |
52722927 |
aagaaagaaggttgacacttgagcgaaagaaatagcaagagcaatggtagaggccgatactggaaggattttaacgaatgatttgaattcttcgacttgt |
52722828 |
T |
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| Q |
311 |
gtcactgtgcatacactccatctgttactgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttat |
410 |
Q |
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| T |
52722827 |
gtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttat |
52722728 |
T |
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| Q |
411 |
tctcatataccaagattaaattaatcaacatcacgc-ttagttatgtgatttcgatcataaattaagct |
478 |
Q |
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| T |
52722727 |
tctcata-gccaagattaaattaattaacatcacactttagttatgcaatttcgattatacattaagct |
52722660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 52699822 - 52699432
Alignment:
| Q |
17 |
aaaagcccaacgcccattcgttgtaacgatgtgatgccacggtggtggccggtaaacttacggagaaatgggattatgaatctctcgtagaaaggtacaa |
116 |
Q |
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||||| ||||| |||||||||||||| ||||||||||| ||| |||||||||||| || ||||||| ||||||||| |||||||| || || |||| || |
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| T |
52699822 |
aaaagtccaactcccattcgttgtaaggatgtgatgccgcggctgtggccggtaaattttcggagaattgggattataaatctctcatataagggtataa |
52699723 |
T |
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| Q |
117 |
gtatgaggccgttgatggcaccaaagacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgacttaaaaa |
216 |
Q |
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| T |
52699722 |
gtatgagactgctgctggcagcaaacacggtaacagatccatttgggatttcgaattta---cctagctttttgttcatgattttggcttgacttagaaa |
52699626 |
T |
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| Q |
217 |
gaaggttgacatttgagcgaaagaaatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgtgtcact |
316 |
Q |
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| T |
52699625 |
ccaggttgacatttgagccaaagagatagaaatagcaatggtagatgcccacactggaaggattttaatgaatgatttgaattcttcgacttgtgtcact |
52699526 |
T |
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| Q |
317 |
gtgcatacactccatctgttactgagtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttat |
410 |
Q |
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| T |
52699525 |
gtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttat |
52699432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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