View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_50 (Length: 489)
Name: NF20384_low_50
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_50 |
 | |
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| [»] scaffold0010 (1 HSPs) |
| | |
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| [»] scaffold0839 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 31716577 - 31716811
Alignment:
| Q |
18 |
aatagaatattgattggcgcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31716577 |
aatagaatattgattggcgcagaatatggcaactgaacgc--------gtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtc |
31716668 |
T |
|
| Q |
118 |
ccggcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatccttttgtttgctttaaggcaa |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31716669 |
tcgacttgtgcaaaaggggatcctttgtgataatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatccttttgtttgctttaaggcaa |
31716768 |
T |
|
| Q |
218 |
caagctattgtaaattactgaagctggataatcctgtttgtga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
31716769 |
caagctattgtaaattactgaagctggataatcttgtttgtga |
31716811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 36 - 433
Target Start/End: Complemental strand, 11596920 - 11596510
Alignment:
| Q |
36 |
gcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccggcttgtgcaaaaggg |
135 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || || ||| || |||| ||||||||| |
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|
| T |
11596920 |
gcagaatatggcagttgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaagtctcgacttgcgcaaaaggg |
11596821 |
T |
|
| Q |
136 |
gatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatcct-tttgtttgctttaaggcaacaagctattgtaaatta |
234 |
Q |
| |
|
||||| ||| |||||||||| ||||| ||||||||||| | |||||| |||||| ||| | |||||||||| |||||||||||||| ||| |||||| |
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|
| T |
11596820 |
gatcccttgcgacgatacttgtgtggtgtgtaatgaattagcagaaacaccaatgcatatcttctttgtttgctctaaggcaacaagctgttggaaatta |
11596721 |
T |
|
| Q |
235 |
ctgaagctggataatcctgtttgtgatctccttctcacagccagcgattttccctctacg-----------ttttgacaagttatccatttcccaagtgg |
323 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||| | ||||||||||||||||| | |||||| | |||||||||||| ||||||| |
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|
| T |
11596720 |
ttgaagctggataatctctatcgtgatcttcttctcattgtcagcgattttccctctatgttgttcgctttttttgataggttatccatttctcaagtgg |
11596621 |
T |
|
| Q |
324 |
cattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgcttgtggtcattaatcgagca-a |
422 |
Q |
| |
|
|| |||||||||| | | ||| ||||||||||||| |||||| |||||||| ||||||| |||||||||||| | ||||||||||||| |||||||| | |
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|
| T |
11596620 |
caatggcagctatgactccatgaagcctttggaaatttcgcaagagcaaactttgggacagtgttgatacaccgccgcttgtggtcattgatcgagcaga |
11596521 |
T |
|
| Q |
423 |
gagacactcta |
433 |
Q |
| |
|
|| |||||||| |
|
|
| T |
11596520 |
gacacactcta |
11596510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 8757945 - 8758023
Alignment:
| Q |
41 |
atatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtccc |
119 |
Q |
| |
|
|||||||| ||||| | ||||||| |||| ||||||||||||||||||||| |||| |||||||||| || |||||||| |
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|
| T |
8757945 |
atatggcagctgaaggaaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtccc |
8758023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 237600 - 237180
Alignment:
| Q |
21 |
agaatattgattggcgcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccg |
120 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || |||||| || |
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|
| T |
237600 |
agaatattgactggggcagaatatggcagctgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtctcg |
237501 |
T |
|
| Q |
121 |
gcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatc-cttttgtttgctttaaggcaaca |
219 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||||| ||||| ||||||||||| | ||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
237500 |
acttctgcaaaaggggatccattgcgacgatacttgtgtggtctgtaatgaattagcggaaacacaaatgcacatcttttttgtttgctctaaggcaaca |
237401 |
T |
|
| Q |
220 |
agctattgtaaattactgaagctggataatcctgtttgtgatctccttctcacagccagcgattttccctctacg-----------ttttgacaagttat |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||| |||||||| ||||| ||||| ||||||| | |||||||| ||||| |
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|
| T |
237400 |
gactattggaaattactgaagctggataatcttgttcgggatcttcttctcactgccagtgatttcccctctatgctgttcactttttttgacaggttat |
237301 |
T |
|
| Q |
309 |
ccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgcttgtggt |
408 |
Q |
| |
|
||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |
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|
| T |
237300 |
ccatttctcaagtggcattggtagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgatacaccgtcgcttatggt |
237201 |
T |
|
| Q |
409 |
cattaatcgagcaagagacac |
429 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
237200 |
ttgtaatcgagcaagagacac |
237180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 8772163 - 8771745
Alignment:
| Q |
21 |
agaatattgattggcgcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccg |
120 |
Q |
| |
|
|||||||||| ||| || |||||||||| |||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || ||||||||| |
|
|
| T |
8772163 |
agaatattgactggggccgaatatggcagttgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtcccg |
8772064 |
T |
|
| Q |
121 |
gcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatc-cttttgtttgctttaaggcaaca |
219 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| | ||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
8772063 |
acttgtgcaaaaggggatcccttgcgacgatacttgtgtggtgtgtaatgaattagcggaaacacaaatgcacatcttttttgtttgctctaaggcaaca |
8771964 |
T |
|
| Q |
220 |
agctattgtaaattactgaagctggataatcctgtttgtgatctccttctcacagccagcgattttccctctacg-----------ttttgacaagttat |
308 |
Q |
| |
|
| || || |||||||||||||||||||||| |||| | ||||| | |||| ||||| ||||| ||||||| | |||||||| ||||| |
|
|
| T |
8771963 |
aactgctggaaattactgaagctggataatcttgttcgggatct--tcgtcactgccagtgatttcccctctatgttgttcactttttttgacaggttat |
8771866 |
T |
|
| Q |
309 |
ccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgcttgtggt |
408 |
Q |
| |
|
||||||| ||||||||||||| |||||| | ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||| |
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|
| T |
8771865 |
ccatttctcaagtggcattggtagctatgactctatggagcctttggaaatgtcggaatagaaaactttgggacaatgttgatacaccgtcgcttgtggt |
8771766 |
T |
|
| Q |
409 |
cattaatcgagcaagagacac |
429 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8771765 |
ttgtaatcgagcaagagacac |
8771745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 429
Target Start/End: Original strand, 49507998 - 49508132
Alignment:
| Q |
295 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
394 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
49507998 |
ttttgacaggttatccatttctcaagtggcattggtagttatgactctatggagcctttggaaatgtcgcaatagcaaactttgggataatgttgataca |
49508097 |
T |
|
| Q |
395 |
ccactgcttgtggtcattaatcgagcaagagacac |
429 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| |
|
|
| T |
49508098 |
ccgtcgcttgtggtttgtaatcgagcaagagacac |
49508132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0839
Description:
Target: scaffold0839; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 115 - 429
Target Start/End: Complemental strand, 5270 - 4944
Alignment:
| Q |
115 |
gtcccggcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacaaaaatgcacatcctttt-gtttgctttaag |
213 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| ||||||| ||||||||||| |||| ||||||| |||| |
|
|
| T |
5270 |
gtcccgacttgtgcaaaaggggatcccttgcgacgatacttgtgtggtctgtaatgaattaacggaaacacaaatgcacatcttttttgtttgctctaag |
5171 |
T |
|
| Q |
214 |
gcaacaagctattgtaaattactgaagctggataatcctgtttgtgatctccttctcacagccagcgattttccctctacg-----------ttttgaca |
302 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||||| |||| | ||||| |||||||| ||||| ||||||||||||| | |||||||| |
|
|
| T |
5170 |
gcaacaagctgttggaaattactgaagttggataatcttgttcgggatcttcttctcactgccagtgattttccctctatgttgttcactttttttgaca |
5071 |
T |
|
| Q |
303 |
agttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgct |
402 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
5070 |
ggttatccatttctcaagtggcattggcggctatgactctacggagcctttgaaaatgtcgcaatagcaaactttgggacaatgttgatacaccgccgct |
4971 |
T |
|
| Q |
403 |
tgtggtcattaatcgagcaagagacac |
429 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
4970 |
tgtggtttgtaatcgagcaagagacac |
4944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 34763312 - 34763178
Alignment:
| Q |
295 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
394 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34763312 |
ttttgacaggttgtccatttctcaagtggcattggcagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgataca |
34763213 |
T |
|
| Q |
395 |
ccactgcttgtggtcattaatcgagcaagagacac |
429 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| |
|
|
| T |
34763212 |
ccgtcgcttgtggtttgtaatcgagcaagagacac |
34763178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 429
Target Start/End: Original strand, 34763563 - 34763669
Alignment:
| Q |
323 |
gcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgcttgtggtcattaatcgagcaa |
422 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
34763563 |
gcattggcagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgatacaccgtcgcttgtggtttgtaatcgagcaa |
34763662 |
T |
|
| Q |
423 |
gagacac |
429 |
Q |
| |
|
||||||| |
|
|
| T |
34763663 |
gagacac |
34763669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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