View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_52 (Length: 486)
Name: NF20384_low_52
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_52 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 471
Target Start/End: Original strand, 32445 - 32914
Alignment:
| Q |
4 |
agtgtggtcgattcttcataattaagctatatattgatcatattttccttctcttcatcatagctatagtgccttacccctactagcttttaatataaat |
103 |
Q |
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| T |
32445 |
agtgtggtcgattcttcataattaagctatatattgatcatattttccttctcttcatcatagctatagtgctttacccctactagcttttaatataaat |
32544 |
T |
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| Q |
104 |
ctacacatgttagggttagggttagtcaccaaacactaactacctaggtctatatacattactcatcaagccatatcttgaccgtacgtctttttcct-- |
201 |
Q |
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| T |
32545 |
ctacacatgttagggttagggttagtcaccaaacactaactacctaggtctatatacagtactcatcaagccatatattgaccgtacgtctttttcatat |
32644 |
T |
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| Q |
202 |
---atgaaatgaaatgaagaaatagacggaataaactcgaattaattcatatcaaagagaaattcattgaattaaaacatgaaaaaacgg-caagtggtg |
297 |
Q |
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| T |
32645 |
gaaatgaaatgaaatgaagaaatagacggaataaactcg----aattcatatcaaagagaaattcattaaattaaaacatgaaaaaacggacaagtggtg |
32740 |
T |
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| Q |
298 |
gtggtggtgaaacgcaacagtacttcatcttcaagaaatactactgttggatatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctg |
397 |
Q |
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| T |
32741 |
gtggtggtgaaacgcaacagtacttcatcttcaagaaatactactgttggatatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctg |
32840 |
T |
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| Q |
398 |
ttgatggatgtatggaattcatggcatgttcaggggaagaagcacttacatgtgctgcttgtggttgtcatagg |
471 |
Q |
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| T |
32841 |
ttgatggatgtatggaattcatggcatgttcaggggaagaagcacttacatgtgctgcttgtggttgtcatagg |
32914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 3643153 - 3643214
Alignment:
| Q |
348 |
atatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatggatgta |
409 |
Q |
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| T |
3643153 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgta |
3643214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 13902388 - 13902331
Alignment:
| Q |
347 |
gatatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatgg |
404 |
Q |
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| T |
13902388 |
gatatggtgagtgtcaaaagaatcatgcagcaaatattggagggtatgctgtagatgg |
13902331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 471
Target Start/End: Complemental strand, 13902284 - 13902255
Alignment:
| Q |
442 |
cttacatgtgctgcttgtggttgtcatagg |
471 |
Q |
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| T |
13902284 |
cttacatgtgctgcttgtggttgtcatagg |
13902255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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