View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_53 (Length: 475)

Name: NF20384_low_53
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_53
NF20384_low_53
[»] chr7 (34 HSPs)
chr7 (19-323)||(21405752-21406056)
chr7 (125-357)||(6797212-6797446)
chr7 (125-357)||(45402697-45402931)
chr7 (196-308)||(12283284-12283397)
chr7 (196-306)||(12283395-12283506)
chr7 (196-306)||(12283504-12283615)
chr7 (196-308)||(10564155-10564268)
chr7 (371-465)||(21406073-21406168)
chr7 (228-308)||(12283081-12283162)
chr7 (217-307)||(10564457-10564548)
chr7 (217-306)||(10564266-10564356)
chr7 (231-296)||(45402666-45402731)
chr7 (217-268)||(10564592-10564643)
chr7 (231-306)||(6797182-6797257)
chr7 (125-172)||(10564264-10564311)
chr7 (217-268)||(10564401-10564452)
chr7 (125-172)||(12283393-12283440)
chr7 (125-172)||(12283502-12283549)
chr7 (305-355)||(39007658-39007708)
chr7 (231-307)||(10564648-10564725)
chr7 (305-357)||(5757391-5757443)
chr7 (305-357)||(34875494-34875546)
chr7 (305-357)||(44141260-44141312)
chr7 (230-296)||(10563842-10563908)
chr7 (233-270)||(4721019-4721056)
chr7 (131-172)||(12283611-12283652)
chr7 (233-277)||(13420629-13420673)
chr7 (305-357)||(27335638-27335689)
chr7 (233-275)||(13420428-13420470)
chr7 (125-170)||(10563831-10563876)
chr7 (305-346)||(16933253-16933294)
chr7 (305-346)||(16938636-16938677)
chr7 (305-346)||(24359887-24359928)
chr7 (305-357)||(46346725-46346777)
[»] chr4 (34 HSPs)
chr4 (19-361)||(34986244-34986576)
chr4 (125-361)||(2847937-2848174)
chr4 (125-328)||(20588071-20588276)
chr4 (125-308)||(9561091-9561276)
chr4 (191-296)||(9561020-9561125)
chr4 (230-306)||(55780302-55780379)
chr4 (230-306)||(55844482-55844559)
chr4 (230-308)||(9561582-9561661)
chr4 (231-296)||(2847906-2847971)
chr4 (231-296)||(20588040-20588105)
chr4 (305-357)||(24686577-24686629)
chr4 (305-357)||(25574137-25574189)
chr4 (238-308)||(810233-810304)
chr4 (305-346)||(38010157-38010198)
chr4 (305-357)||(16298926-16298978)
chr4 (233-270)||(808744-808781)
chr4 (233-270)||(809115-809152)
chr4 (233-270)||(809486-809523)
chr4 (233-270)||(809656-809693)
chr4 (233-270)||(810027-810064)
chr4 (305-346)||(30357823-30357864)
chr4 (233-270)||(54754358-54754395)
chr4 (233-277)||(808945-808989)
chr4 (233-276)||(54757722-54757765)
chr4 (231-272)||(9560960-9561001)
chr4 (305-346)||(10472513-10472554)
chr4 (305-346)||(13635734-13635775)
chr4 (305-346)||(49492521-49492562)
chr4 (233-270)||(54756723-54756760)
chr4 (233-270)||(54756924-54756961)
chr4 (233-270)||(54757527-54757564)
chr4 (233-269)||(809316-809352)
chr4 (233-277)||(809857-809901)
chr4 (125-169)||(1701151-1701195)
[»] chr2 (24 HSPs)
chr2 (19-361)||(24024361-24024689)
chr2 (125-261)||(28056102-28056239)
chr2 (200-287)||(30771316-30771404)
chr2 (230-308)||(28048246-28048325)
chr2 (305-357)||(39548047-39548099)
chr2 (224-306)||(30771407-30771490)
chr2 (233-306)||(28056194-28056268)
chr2 (305-357)||(5098721-5098773)
chr2 (233-277)||(21173668-21173712)
chr2 (233-277)||(27970563-27970607)
chr2 (233-270)||(44348258-44348295)
chr2 (233-270)||(44350782-44350819)
chr2 (305-357)||(13081869-13081921)
chr2 (233-277)||(27970192-27970236)
chr2 (233-277)||(28056697-28056741)
chr2 (305-357)||(40853688-40853740)
chr2 (238-277)||(27970362-27970401)
chr2 (238-277)||(28056867-28056906)
chr2 (238-277)||(30767575-30767614)
chr2 (238-277)||(30771738-30771777)
chr2 (233-270)||(21173498-21173535)
chr2 (305-357)||(25995291-25995343)
chr2 (305-357)||(36636946-36636998)
chr2 (238-270)||(44348464-44348496)
[»] chr5 (20 HSPs)
chr5 (125-361)||(7183138-7183376)
chr5 (125-361)||(15912958-15913196)
chr5 (125-357)||(39056279-39056513)
chr5 (125-296)||(33868846-33869018)
chr5 (231-306)||(7183331-7183407)
chr5 (231-306)||(39056248-39056324)
chr5 (305-357)||(16552648-16552700)
chr5 (231-296)||(33868984-33869049)
chr5 (305-357)||(33868160-33868212)
chr5 (253-357)||(6054370-6054475)
chr5 (305-357)||(4674965-4675017)
chr5 (305-357)||(16668803-16668855)
chr5 (248-306)||(15912944-15913003)
chr5 (233-270)||(30407683-30407720)
chr5 (233-270)||(30407884-30407921)
chr5 (233-270)||(30408086-30408123)
chr5 (233-270)||(30408691-30408728)
chr5 (233-270)||(30408891-30408928)
chr5 (305-357)||(18465565-18465617)
chr5 (233-277)||(25192284-25192328)
[»] scaffold0069 (2 HSPs)
scaffold0069 (125-354)||(51367-51598)
scaffold0069 (231-306)||(51553-51629)
[»] scaffold0460 (2 HSPs)
scaffold0460 (125-354)||(1612-1843)
scaffold0460 (231-306)||(1798-1874)
[»] scaffold0012 (2 HSPs)
scaffold0012 (125-357)||(119207-119441)
scaffold0012 (231-306)||(119396-119472)
[»] chr3 (30 HSPs)
chr3 (19-361)||(41568832-41569158)
chr3 (125-357)||(32232996-32233230)
chr3 (19-204)||(51452934-51453104)
chr3 (25-108)||(23685080-23685159)
chr3 (25-108)||(24057317-24057396)
chr3 (231-296)||(32233196-32233261)
chr3 (230-308)||(40219300-40219379)
chr3 (230-308)||(40219501-40219580)
chr3 (230-308)||(40219702-40219781)
chr3 (230-308)||(40219903-40219982)
chr3 (25-125)||(23669392-23669490)
chr3 (25-125)||(24041668-24041766)
chr3 (305-354)||(28299961-28300010)
chr3 (233-277)||(11974933-11974977)
chr3 (305-357)||(23755290-23755342)
chr3 (305-357)||(47728393-47728445)
chr3 (309-357)||(51682015-51682063)
chr3 (306-357)||(37319470-37319521)
chr3 (233-277)||(11975103-11975147)
chr3 (233-277)||(11975273-11975317)
chr3 (233-277)||(11975443-11975487)
chr3 (305-357)||(53594973-53595025)
chr3 (305-346)||(30947920-30947961)
chr3 (305-346)||(33414022-33414063)
chr3 (305-346)||(41192359-41192400)
chr3 (305-346)||(51846789-51846830)
chr3 (305-357)||(23699332-23699384)
chr3 (305-357)||(23717787-23717839)
chr3 (305-357)||(23736243-23736295)
chr3 (305-357)||(26662547-26662599)
[»] scaffold0006 (3 HSPs)
scaffold0006 (125-357)||(209331-209565)
scaffold0006 (243-354)||(171513-171625)
scaffold0006 (231-306)||(209520-209596)
[»] scaffold0002 (2 HSPs)
scaffold0002 (125-357)||(450207-450440)
scaffold0002 (231-306)||(450395-450471)
[»] scaffold0717 (2 HSPs)
scaffold0717 (125-361)||(7169-7407)
scaffold0717 (231-306)||(7138-7214)
[»] chr1 (29 HSPs)
chr1 (125-357)||(13590472-13590706)
chr1 (125-354)||(20372213-20372436)
chr1 (200-357)||(5077351-5077509)
chr1 (125-242)||(20481214-20481332)
chr1 (243-354)||(13673899-13674011)
chr1 (230-308)||(19845814-19845893)
chr1 (231-306)||(20372391-20372467)
chr1 (231-306)||(20481287-20481363)
chr1 (305-357)||(31529674-31529726)
chr1 (305-357)||(33097410-33097462)
chr1 (305-357)||(51801742-51801794)
chr1 (231-296)||(13590672-13590737)
chr1 (233-277)||(19846086-19846130)
chr1 (305-357)||(37639346-37639398)
chr1 (305-357)||(44260523-44260575)
chr1 (306-357)||(35198191-35198242)
chr1 (233-270)||(37223273-37223310)
chr1 (233-270)||(37223613-37223650)
chr1 (233-270)||(37223783-37223820)
chr1 (233-270)||(37223953-37223990)
chr1 (305-357)||(44688619-44688671)
chr1 (305-346)||(11421610-11421651)
chr1 (195-224)||(15992413-15992442)
chr1 (125-193)||(19846032-19846101)
chr1 (233-266)||(37223447-37223480)
chr1 (233-270)||(37224123-37224160)
chr1 (305-346)||(49936946-49936987)
chr1 (305-346)||(50351819-50351860)
chr1 (313-357)||(51420350-51420394)
[»] chr6 (21 HSPs)
chr6 (125-336)||(7851365-7851575)
chr6 (125-357)||(32556349-32556585)
chr6 (143-308)||(18762689-18762856)
chr6 (196-306)||(18762605-18762716)
chr6 (196-306)||(18762496-18762607)
chr6 (286-361)||(27079919-27079995)
chr6 (230-296)||(28123076-28123142)
chr6 (237-308)||(28122932-28123004)
chr6 (236-296)||(32556551-32556611)
chr6 (125-172)||(18762562-18762609)
chr6 (130-172)||(18762458-18762500)
chr6 (233-270)||(22038107-22038144)
chr6 (305-346)||(30908668-30908709)
chr6 (233-277)||(15034034-15034078)
chr6 (233-277)||(28123534-28123578)
chr6 (234-296)||(7851541-7851603)
chr6 (233-270)||(28123342-28123379)
chr6 (305-346)||(31216678-31216719)
chr6 (305-357)||(18611193-18611245)
chr6 (231-306)||(18762422-18762498)
chr6 (238-270)||(22038313-22038345)
[»] chr8 (25 HSPs)
chr8 (198-361)||(44508953-44509117)
chr8 (230-308)||(17225382-17225461)
chr8 (230-308)||(40005570-40005649)
chr8 (305-357)||(2522872-2522924)
chr8 (305-357)||(40247294-40247346)
chr8 (230-308)||(40005771-40005850)
chr8 (236-308)||(40005972-40006045)
chr8 (233-277)||(17057590-17057634)
chr8 (233-277)||(17225656-17225700)
chr8 (233-277)||(17590591-17590635)
chr8 (236-286)||(40006167-40006217)
chr8 (305-346)||(9852286-9852327)
chr8 (308-357)||(10443582-10443631)
chr8 (305-346)||(34648137-34648178)
chr8 (305-357)||(12355427-12355479)
chr8 (305-335)||(7614094-7614124)
chr8 (236-270)||(40006097-40006131)
chr8 (236-286)||(40006124-40006174)
chr8 (233-270)||(17057388-17057425)
chr8 (236-277)||(17225834-17225875)
chr8 (233-270)||(17590800-17590837)
chr8 (305-346)||(30413930-30413971)
chr8 (305-357)||(13526680-13526732)
chr8 (305-357)||(13616215-13616267)
chr8 (305-357)||(34633330-34633382)
[»] scaffold0065 (6 HSPs)
scaffold0065 (139-308)||(411-582)
scaffold0065 (129-294)||(564-722)
scaffold0065 (196-306)||(681-792)
scaffold0065 (230-308)||(23-102)
scaffold0065 (231-306)||(790-865)
scaffold0065 (125-172)||(788-835)
[»] scaffold0104 (4 HSPs)
scaffold0104 (125-308)||(39141-39323)
scaffold0104 (230-308)||(39473-39552)
scaffold0104 (230-308)||(39850-39929)
scaffold0104 (233-304)||(39112-39184)
[»] scaffold0019 (3 HSPs)
scaffold0019 (198-308)||(168516-168627)
scaffold0019 (230-308)||(168322-168401)
scaffold0019 (233-295)||(168665-168727)
[»] scaffold0050 (12 HSPs)
scaffold0050 (196-308)||(16195-16308)
scaffold0050 (202-296)||(22770-22864)
scaffold0050 (216-292)||(16106-16182)
scaffold0050 (212-307)||(22584-22680)
scaffold0050 (213-267)||(22877-22931)
scaffold0050 (212-292)||(22680-22764)
scaffold0050 (125-172)||(16152-16199)
scaffold0050 (125-170)||(22634-22679)
scaffold0050 (230-307)||(16511-16589)
scaffold0050 (125-170)||(16056-16101)
scaffold0050 (125-170)||(22734-22779)
scaffold0050 (125-165)||(22830-22870)
[»] scaffold0558 (5 HSPs)
scaffold0558 (196-308)||(10638-10751)
scaffold0558 (230-308)||(10434-10513)
scaffold0558 (230-308)||(10057-10136)
scaffold0558 (233-305)||(10758-10831)
scaffold0558 (125-169)||(10758-10802)
[»] scaffold0455 (4 HSPs)
scaffold0455 (230-296)||(1162-1228)
scaffold0455 (237-308)||(1018-1090)
scaffold0455 (233-277)||(1819-1863)
scaffold0455 (233-277)||(1620-1664)
[»] scaffold0553 (1 HSPs)
scaffold0553 (230-308)||(6373-6450)
[»] scaffold0534 (2 HSPs)
scaffold0534 (233-277)||(5929-5973)
scaffold0534 (233-277)||(8864-8908)
[»] scaffold0023 (3 HSPs)
scaffold0023 (233-277)||(126256-126300)
scaffold0023 (233-277)||(126426-126470)
scaffold0023 (233-270)||(128579-128616)
[»] scaffold0144 (12 HSPs)
scaffold0144 (233-270)||(19721-19758)
scaffold0144 (233-270)||(28835-28872)
scaffold0144 (233-270)||(30981-31018)
scaffold0144 (233-270)||(33393-33430)
scaffold0144 (233-270)||(33903-33940)
scaffold0144 (233-270)||(34073-34110)
scaffold0144 (233-266)||(19385-19418)
scaffold0144 (233-270)||(19551-19588)
scaffold0144 (233-270)||(28665-28702)
scaffold0144 (233-270)||(33563-33600)
scaffold0144 (233-270)||(34243-34280)
scaffold0144 (233-266)||(34583-34616)
[»] scaffold0581 (1 HSPs)
scaffold0581 (233-270)||(310-347)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 21405752 - 21406056
Alignment:
Q  19 catatgaataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21405752 catatgaataattgaaaatatcataacagactcattagtacctgaactaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 21405851  T
Q  119 atacgatttgatagtattgtatgtgaaaccaagataattatgtaatggttttaatgaaattataattgttacatgactttaaataatgattaagatgtta 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  21405852 atacgatttgatagtcttgtatgtgaaaccaagataattatgtaatggttttaatgaaattattattattacatgactttaaataatgattaagatgtta 21405951  T
Q  219 tacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgttaatggttttgtgaagtgttta 318  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  21405952 tacactgaaattattactgaaatcataattatggtttaatggttttgatagtcttctataagaaaccaaaataattattaatagttttgtgaagtgttta 21406051  T
Q  319 tgcat 323  Q
    |||||    
T  21406052 tgcat 21406056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 125 - 357
Target Start/End: Original strand, 6797212 - 6797446
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  6797212 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 6797311  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6797312 tgaaactattactgaaaccataattatggtttaatggttttgatagtcttttatgagaaaccaaaataattgtctaataattttgtgaagtgtttatgca 6797411  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     | ||||||||||| ||||||||| ||||||||||    
T  6797412 ggatgcataaggaaatgacttatgcataataactt 6797446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 125 - 357
Target Start/End: Original strand, 45402697 - 45402931
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  45402697 tttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 45402796  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||| ||||||||||||     
T  45402797 tgaaattattattgaaaccataattatggtttaatggttttgatagtcttttatgagaaaccaaaataatagtctaatggttttgtaaagtgtttatgct 45402896  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     ||||||||||||| | ||||||| ||||||||||    
T  45402897 gggtgcataaggaaataacttatgcataataactt 45402931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 12283397 - 12283284
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||  ||||||||||||||||    
T  12283397 tttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatgatttaatggttttgacagtcttcaatgtgaaaccaaaataattg 12283298  T
Q  296 t-taatggttttgt 308  Q
    | ||||||||||||    
T  12283297 tctaatggttttgt 12283284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 12283506 - 12283395
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| || |||  |||||||| |||||||    
T  12283506 tttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgacagtattgtatgtgaaaccaagataattg 12283407  T
Q  296 t-taatggtttt 306  Q
    | ||||||||||    
T  12283406 tgtaatggtttt 12283395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 12283615 - 12283504
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| || |||  |||||||| |||||||    
T  12283615 tttaaataatgattaagatgttatacactgaaattattaccgaaaccataagtatggtttaatggttttgacagtattgtatgtgaaaccaagataattg 12283516  T
Q  296 t-taatggtttt 306  Q
    | ||||||||||    
T  12283515 tgtaatggtttt 12283504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 10564268 - 10564155
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||| | ||  ||||||||||||||||    
T  10564268 tttaaataatgattaaaatgttatacactgaaattattactgaaaccataagtatgacttaatggttttgacagtctacaatgtgaaaccaaaataattg 10564169  T
Q  296 t-taatggttttgt 308  Q
    | ||||||||||||    
T  10564168 tctaatggttttgt 10564155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 21406073 - 21406168
Alignment:
Q  371 gggtctggctagtattataatacatgtcccatacccgcacttnnnnnnnnn-ctatatatggactcatactcgcgatagcaacatttgtatctgtg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  21406073 gggtctggctagtattataatacatgtcccatacccgcacttaaaaaaaaaactatatatggactcatactcgcgatagcaacatttgtatctgtg 21406168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 12283162 - 12283081
Alignment:
Q  228 attattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||||  |||||||| |||||||| ||||||||||||    
T  12283162 attattactgaaactataagtatggtttaatggttttgatagtgttctatgtgaaaccaacataattgtctaatggttttgt 12283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 10564548 - 10564457
Alignment:
Q  217 tatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttg 307  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||  ||||||| ||  ||||| |||||||||||    
T  10564548 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 10564356 - 10564266
Alignment:
Q  217 tatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| || |||  |||||||| |||| ||| ||||||||||    
T  10564356 tatacactgaaattatttctgaaaccataagtatgatttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggtttt 10564266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 45402666 - 45402731
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  45402666 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgt 45402731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 10564643 - 10564592
Alignment:
Q  217 tatacactgaaattattactgaaaccataattatggtttaatggttttgata 268  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  10564643 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgata 10564592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 6797182 - 6797257
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  6797182 attactgaaaccatagt-atggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 6797257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 10564311 - 10564264
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10564311 tttgatagtattgtatgtgaaaccaagataaatgtgtaatggttttaa 10564264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 10564452 - 10564401
Alignment:
Q  217 tatacactgaaattattactgaaaccataattatggtttaatggttttgata 268  Q
    |||||||||||||||| || |||||||||| |||||||||||||||||||||    
T  10564452 tatacactgaaattatgaccgaaaccataagtatggtttaatggttttgata 10564401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 12283440 - 12283393
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12283440 tttgacagtattgtatgtgaaaccaagataattgtgtaatggttttaa 12283393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 12283549 - 12283502
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12283549 tttgacagtattgtatgtgaaaccaagataattgtgtaatggttttaa 12283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 39007658 - 39007708
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataac 355  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  39007658 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataac 39007708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 10564725 - 10564648
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttg 307  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||  ||||||| ||  ||||| |||||||||||    
T  10564725 attactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 5757443 - 5757391
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  5757443 ttgtgaagtgtttatgcacggtgcataaggaaatgtcttatgcataataactt 5757391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 34875546 - 34875494
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  34875546 ttgtgaagtgtttatgcagggtgcataaggaaatggcttatgcataataactt 34875494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 44141260 - 44141312
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| || |||||||    
T  44141260 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcatgataactt 44141312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 10563908 - 10563842
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||  ||  |||||||| ||||||||    
T  10563908 tattactgaaaccataagtatggtttaacggttttgatagtattaaatgtgaaaccaagataattgt 10563842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 4721019 - 4721056
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4721019 tactgaaaccataagtatggtttaatggttttgatagt 4721056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 12283652 - 12283611
Alignment:
Q  131 agtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  12283652 agtattgcatgtgaaaccaagataattgtgtaatggttttaa 12283611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 13420629 - 13420673
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  13420629 tactgaaaccataagtatggtgtaatggttttgatagtgttctat 13420673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 27335638 - 27335689
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||||||||| || |||||||| |||||||||||    
T  27335638 ttgtgaagtgtttatgca-ggtgcataagaaaatgacttatttataataactt 27335689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 13420428 - 13420470
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttct 275  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||    
T  13420428 tactgaaaccataagtatggttgaatggttttgatagtgttct 13420470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 10563876 - 10563831
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt 170  Q
    ||||||||||||  ||||||||||||||||||| ||||||| ||||    
T  10563876 tttgatagtattaaatgtgaaaccaagataattgtgtaatgatttt 10563831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 16933253 - 16933294
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  16933253 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 16933294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 16938636 - 16938677
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  16938636 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 16938677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 24359928 - 24359887
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||| ||||| ||||||||||||| |||||||||    
T  24359928 ttgtgaagtgttgatgcacggtgcataaggaaatgacttatg 24359887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 46346725 - 46346777
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||| || | |||||||| || ||||||||| ||||||||||    
T  46346725 ttgtgaagtgtttatacaggatgcataagaaaatgacttatgcataataactt 46346777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 34986576 - 34986244
Alignment:
Q  19 catatgaataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||           || |||||||||||||||||||||||||||||||    
T  34986576 catatgaataattgaaaatatcataacagactgattagtacctgaactaagtaaa-----------atgatcattggaaagtggcttagatgatttgata 34986488  T
Q  119 atacgatttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgtt 217  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  34986487 atacgatttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgtt 34986388  T
Q  218 atacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  34986387 atacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtt 34986288  T
Q  317 tatgcatggtgcataaggaattgacttatgtataataacttctcc 361  Q
    |||| | ||||||||| | | ||||||||| |||||| |||||||    
T  34986287 tatgtagggtgcataatg-actgacttatgcataatatcttctcc 34986244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 125 - 361
Target Start/End: Original strand, 2847937 - 2848174
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  2847937 tttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 2848036  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||| ||||||||    
T  2848037 tgaaattattactgaaaccataattat-gtttaatggttttgatagtcttctatgagaaactaaaataattgtctaatggttttgtaaagtatttatgca 2848135  T
Q  323 tggtgcataaggaattgacttatgtataataacttctcc 361  Q
     ||||||||||||| ||||||||| ||||||||||||||    
T  2848136 gggtgcataaggaactgacttatgcataataacttctcc 2848174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 20588071 - 20588276
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||| ||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  20588071 tttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttttaataaaattattattgttacatggttttaaataatgattaagatgttatacac 20588170  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |  ||| |||||||||||||||||| ||    
T  20588171 tgaaactattagtgaaaccataattatgatttaatggttttgatagtcttctatgagaaaccaaaataattatcaaatagttttgtgaagtgtttataca 20588270  T
Q  323 tggtgc 328  Q
     |||||    
T  20588271 gggtgc 20588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 9561091 - 9561276
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa-tgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||| | |||||| ||||||||| |||||| | ||||| |||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||||||    
T  9561091 tttgatattcttgtatatgaaaccaaaataattgtctaatgtttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacac 9561190  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    | ||||||||||||||||||||| |||| |||||||||||||||| ||||| ||  ||||||||||||||||| ||||||||||||    
T  9561191 taaaattattactgaaaccataagtatgatttaatggttttgataatcttcaatgtgaaaccaaaataattgtctaatggttttgt 9561276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 9561020 - 9561125
Alignment:
Q  191 atgactttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaat 290  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||| |||||||||||    
T  9561020 atgattttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgatattcttgtatatgaaaccaaaat 9561119  T
Q  291 aattgt 296  Q
    ||||||    
T  9561120 aattgt 9561125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 55780379 - 55780302
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||    
T  55780379 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55780302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 55844559 - 55844482
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||    
T  55844559 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55844482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 9561582 - 9561661
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  |||| |||||||||||| |||| |||||||    
T  9561582 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaatcaaaataattgtctaatagttttgt 9561661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 2847906 - 2847971
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  2847906 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgt 2847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 20588040 - 20588105
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  20588040 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgt 20588105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 24686629 - 24686577
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  24686629 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 24686577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 25574137 - 25574189
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  25574137 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 25574189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 810233 - 810304
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||| ||||||||||||||||||||||| | ||||  ||||||||| ||||||| ||||||||||||    
T  810233 aaaccataagtatggtttaatggttttgatagtgtcctatgtgaaaccaaactaattgtctaatggttttgt 810304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 38010198 - 38010157
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  38010198 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatg 38010157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 16298978 - 16298926
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||    
T  16298978 ttgtgaagtgattatgcagggtgcataaggaaatgacttatgcataataactt 16298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 808744 - 808781
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  808744 tactgaaaccataagtatggtttaatggttttgatagt 808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 809115 - 809152
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809115 tactgaaaccataagtatggtttaatggttttgatagt 809152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 809486 - 809523
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809486 tactgaaaccataagtatggtttaatggttttgatagt 809523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 809656 - 809693
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809656 tactgaaaccataagtatggtttaatggttttgatagt 809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 810027 - 810064
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  810027 tactgaaaccataagtatggtttaatggttttgatagt 810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 30357864 - 30357823
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  30357864 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatg 30357823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 54754395 - 54754358
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  54754395 tactgaaaccataagtatggtttaatggttttgatagt 54754358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 808945 - 808989
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  808945 tactaaaaccataagtatggtttaatggttttgatagtgttctat 808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 54757765 - 54757722
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttcta 276  Q
    |||||||||||||| |||||| |||||||||||||||| |||||    
T  54757765 tactgaaaccataagtatggtataatggttttgatagtgttcta 54757722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 9560960 - 9561001
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtct 272  Q
    |||||||||| | ||| |||||||||||||||||||||||||    
T  9560960 attactgaaatcgtaaatatggtttaatggttttgatagtct 9561001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 10472554 - 10472513
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    ||||||| |||||||||| ||||||||||||| |||||||||    
T  10472554 ttgtgaaatgtttatgcacggtgcataaggaaatgacttatg 10472513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 13635734 - 13635775
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  13635734 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 13635775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 49492521 - 49492562
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  49492521 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 49492562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 54756760 - 54756723
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54756760 tactgaaaccataagtatggtataatggttttgatagt 54756723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 54756961 - 54756924
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54756961 tactgaaaccataagtatggtataatggttttgatagt 54756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 54757564 - 54757527
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54757564 tactgaaaccataagtatggtataatggttttgatagt 54757527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 809316 - 809352
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatag 269  Q
    |||||||||||||| |||||||||||| |||||||||    
T  809316 tactgaaaccataagtatggtttaatgattttgatag 809352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 809857 - 809901
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||| ||||||||| |||||||||||| |||||||||| ||||||    
T  809857 tactaaaaccataagtatggtttaatgattttgatagtgttctat 809901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 1701151 - 1701195
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttt 169  Q
    ||||||||| |||||||| |||| ||||||||| |||||||||||    
T  1701151 tttgatagtgttgtatgtaaaactaagataattgtgtaatggttt 1701195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 24024361 - 24024689
Alignment:
Q  19 catatgaataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||                |||||||||||||||||||||||    
T  24024361 catatgaataattgaaaatatcataacagactgattagtacctgaactaagtaaagcttgc----------------aaagtggcttagatgatttgata 24024444  T
Q  119 atacgatttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgtt 217  Q
    ||| ||||||||||| |||||||||| || || |||||| |||||||||||| ||||||||||| ||||||||||   ||||||||||||||||||||||    
T  24024445 atatgatttgatagttttgtatgtgatactaacataattgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgtt 24024544  T
Q  218 atacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  24024545 atacactgaaattattactgaaaccataattatggtttaatggttttgataatcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtt 24024644  T
Q  317 tatgcatggtgcataaggaattgacttatgtataataacttctcc 361  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  24024645 tatgcatggtgcataaggaattgacttatgcataataacttctcc 24024689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 28056239 - 28056102
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa-tgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| |||||||| ||||||| |||||| |||||||||||||| ||||||||| | || ||||||  |||||||||||||||| || ||||||||    
T  28056239 tttgatagtcttgtatgtaaaaccaatataattgtgtaatggttttaaatgaaattattaatggtacatgggtttaaataatgattaaaatattatacac 28056140  T
Q  224 tgaaattattactgaaaccataattatggtttaatggt 261  Q
    |||||||||||||||||| ||||  |||||||||||||    
T  28056139 tgaaattattactgaaacaataagcatggtttaatggt 28056102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 30771404 - 30771316
Alignment:
Q  200 aataatgattaagatgttatacactgaaattat-tactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaa 287  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||| ||||||| ||  ||||||||    
T  30771404 aataatgattaagatgttatacactgaaattatagactgaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaa 30771316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 28048325 - 28048246
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||| || |||||||||    
T  28048325 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctagtggttttgt 28048246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 39548099 - 39548047
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  39548099 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgtataataactt 39548047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 30771490 - 30771407
Alignment:
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||| |||||| ||||||||| ||||| ||||||||||||| ||||||| ||  ||||||||||||||||| ||||||||||    
T  30771490 tgaaatcattactaaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggtttt 30771407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 28056268 - 28056194
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||| |||||||||||||||||||||||||| |||   ||||||| |||||||| ||||||||||    
T  28056268 tactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaatataattgtgtaatggtttt 28056194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 5098773 - 5098721
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  5098773 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 5098721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 21173668 - 21173712
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  21173668 tactgaaaccataagtatggtttaatggttttgatagtgttctat 21173712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 27970607 - 27970563
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  27970607 tactgaaaccataagtatggtttaatggttttgatagtgttctat 27970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 44348258 - 44348295
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44348258 tactgaaaccataagtatggtttaatggttttgatagt 44348295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 44350782 - 44350819
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44350782 tactgaaaccataagtatggtttaatggttttgatagt 44350819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 13081869 - 13081921
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||| | ||||||||| ||| ||||||||| ||||||||||    
T  13081869 ttgtgaagtgtttatgtagggtgcataatgaaatgacttatgcataataactt 13081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 27970236 - 27970192
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||    
T  27970236 tactgaaaccataaatatggtttaatggttttgacagtgttctat 27970192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 28056741 - 28056697
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||    
T  28056741 tactgaaaccataaatatggtttaatggttttgacagtgttctat 28056697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 40853688 - 40853740
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| | ||||||||||| || |||||| ||||||||||    
T  40853688 ttgtgaagtgtttatgcaggatgcataaggaaatggcttatgcataataactt 40853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 27970401 - 27970362
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  27970401 aaaccataagtatggtttaatggttttgatagtgttctat 27970362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 28056906 - 28056867
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  28056906 aaaccataagtatggtttaatggttttgatagtgttctat 28056867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 30767614 - 30767575
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  30767614 aaaccataagtatggtttaatggttttgatagtgttctat 30767575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 30771777 - 30771738
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  30771777 aaaccataagtatggtttaatggttttgatagtgttctat 30771738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 21173498 - 21173535
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  21173498 tactgaaaccataagtatgatttaatggttttgatagt 21173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 25995343 - 25995291
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||| ||||||||  |||||||||||| || |||||| ||||||||||    
T  25995343 ttgtgaagtatttatgcagagtgcataaggaaatgtcttatgcataataactt 25995291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 36636946 - 36636998
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||| | ||| |||||| || ||||||||| ||||||||||    
T  36636946 ttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataactt 36636998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 44348464 - 44348496
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagt 270  Q
    ||||||||| |||||||||||||||||||||||    
T  44348464 aaaccataagtatggtttaatggttttgatagt 44348496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 125 - 361
Target Start/End: Complemental strand, 7183376 - 7183138
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  7183376 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 7183277  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  7183276 tgaaattattactgaaaccataattatggtttaatgattttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 7183177  T
Q  323 tggtgcataaggaattgacttatgtataataacttctcc 361  Q
      |||||||||||| ||||||||| ||||||||||||||    
T  7183176 gtgtgcataaggaactgacttatgcataataacttctcc 7183138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 125 - 361
Target Start/End: Original strand, 15912958 - 15913196
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  15912958 tttgatagtcttgtatgtgaaaccaatataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacac 15913057  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||||    
T  15913058 taaaattattactgaaaccataattatggtttaatgattttgatagtcttctatgagaaaccaaaataattgtatgatggttttgtaaagtgtttatgca 15913157  T
Q  323 tggtgcataaggaattgacttatgtataataacttctcc 361  Q
     | ||||||||||| ||||||||| ||||||||||||||    
T  15913158 ggatgcataaggaactgacttatgcataataacttctcc 15913196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 125 - 357
Target Start/End: Original strand, 39056279 - 39056513
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||  ||||||||| |||||||||| |||||||    
T  39056279 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaatgattattgtgacatggttttaaataacgattaagatggtatacac 39056378  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||    
T  39056379 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttaagca 39056478  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     |||||||||| || ||| ||||| ||||||||||    
T  39056479 gggtgcataagaaaatgatttatgcataataactt 39056513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 33869018 - 33868846
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  33869018 tttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 33868919  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33868918 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctatgagaaaccaaaataattgt 33868846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 7183407 - 7183331
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  7183407 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 7183331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 39056248 - 39056324
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  39056248 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 39056324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 16552648 - 16552700
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16552648 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcataataactt 16552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 33869049 - 33868984
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  33869049 attactgaaaccaaaagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgt 33868984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 33868212 - 33868160
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  33868212 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 33868160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 6054475 - 6054370
Alignment:
Q  253 tttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataa 351  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||  ||||||||| || ||||  | | |||||| | || ||||||||| ||||    
T  6054475 tttaatggttttgattgtcttctatgagaaaccaaaataattgtctaataattttgtgaaatgcttatataggatgcataggaaaatgacttatgcataa 6054376  T
Q  352 taactt 357  Q
    | ||||    
T  6054375 tgactt 6054370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 4675017 - 4674965
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||    
T  4675017 ttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 4674965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 16668803 - 16668855
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  16668803 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 16668855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 15912944 - 15913003
Alignment:
Q  248 tatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  15912944 tatggtttaatggttttgatagtcttgtatgtgaaaccaatataattgtgtaatggtttt 15913003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 30407683 - 30407720
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30407683 tactgaaaccataagtatggtataatggttttgatagt 30407720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 30407884 - 30407921
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30407884 tactgaaaccataagtatggtataatggttttgatagt 30407921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 30408086 - 30408123
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408086 tactgaaaccataagtatggtataatggttttgatagt 30408123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 30408691 - 30408728
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408691 tactgaaaccataagtatggtataatggttttgatagt 30408728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 30408891 - 30408928
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408891 tactgaaaccataagtatggtataatggttttgatagt 30408928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 18465565 - 18465617
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| | ||||||| ||| || |||||| ||||||||||    
T  18465565 ttgtgaagtgtttatgcaggatgcataatgaaatgtcttatgcataataactt 18465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 25192284 - 25192328
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||  ||||||||||||||||||| ||| ||||||    
T  25192284 tactgaaaccatacgtatggtttaatggttttgaaagtgttctat 25192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 125 - 354
Target Start/End: Complemental strand, 51598 - 51367
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  51598 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 51499  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  51498 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 51399  T
Q  323 tggtgcataaggaattgacttatgtataataa 354  Q
     |||||||||| || ||||||||| |||||||    
T  51398 gggtgcataagaaaatgacttatgcataataa 51367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 51629 - 51553
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  51629 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 51553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 125 - 354
Target Start/End: Complemental strand, 1843 - 1612
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||||||||||||    
T  1843 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacac 1744  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  1743 tgaaattattactgaaaccataattatggtttaatggttttgatattcttttatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 1644  T
Q  323 tggtgcataaggaattgacttatgtataataa 354  Q
     ||||||||||||| ||||||||| |||||||    
T  1643 gggtgcataaggaaatgacttatgcataataa 1612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 1874 - 1798
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  1874 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 119441 - 119207
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||   ||||||||||||||||||||||||| ||    
T  119441 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgttatatac 119342  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  119341 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 119242  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     ||||||||  ||| ||||||||||||||||||||    
T  119241 gggtgcatatagaaatgacttatgtataataactt 119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 119472 - 119396
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  119472 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 119396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 41569158 - 41568832
Alignment:
Q  19 catatgaataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 118  Q
    |||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||| ||                |||||||||||||||||||||||    
T  41569158 catatgaataattgaaaatatcataagagactgattagtacccgaactaagtaaagcttgc----------------aaagtggcttagatgatttgata 41569075  T
Q  119 atacgatttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgat----taaga 213  Q
    ||| ||||| ||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||    |||||    
T  41569074 atatgatttcatagtcttgtatgtgaaactaagataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgatcgattaaga 41568975  T
Q  214 tgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaag 312  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||      ||||| ||||||||||||||||    
T  41568974 tgttatacattaaaattattactgaaaccgtaattatggtttaatgattttgatagtcttctatgagaaacc------attgtctaatggttttgtgaag 41568881  T
Q  313 tgtttatgcatggtgcataaggaattgacttatgtataataacttctcc 361  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||    
T  41568880 tatttatgcatggtgcataaggaattgacttatgcataataacttctcc 41568832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 32233230 - 32232996
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||  |||||||||||||||||||| |||||||    
T  32233230 tttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgatatacac 32233131  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |  ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  32233130 ttgaattattaccgaaactataattatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 32233031  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     ||||||||||||| ||||||||| ||||||||||    
T  32233030 gggtgcataaggaaatgacttatgcataataactt 32232996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 51453104 - 51452934
Alignment:
Q  19 catatgaataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgata 118  Q
    |||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||| ||                |||||||||||||||||||||||    
T  51453104 catatgaataattgaaaatatcataagagactaattagtacctcaactaagtaaagcttgc----------------aaagtggcttagatgatttgata 51453021  T
Q  119 atacgatttgatagtattgtatgtgaaaccaagataattatgtaatgg-ttttaatgaaattataattgttacatgactttaaataa 204  Q
    ||||||||| | ||| |||||| | |||| || |||||| |||||||| ||||||||||||||| |||||||||||| |||||||||    
T  51453020 atacgatttcacagttttgtatctaaaactaaaataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataa 51452934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 23685080 - 23685159
Alignment:
Q  25 aataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttaga 108  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||     || ||||||| |||||||||||||||||||||    
T  23685080 aataattgaaaatatcataacagacttattagtacctgaactaagta----gagtttgcaatgatcattggaaagtggcttaga 23685159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 24057317 - 24057396
Alignment:
Q  25 aataattgaaaatatcataacagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttaga 108  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||     || ||||||| |||||||||||||||||||||    
T  24057317 aataattgaaaatatcataacagacttattagtacctgaactaagta----gagtttgcaatgatcattggaaagtggcttaga 24057396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 32233261 - 32233196
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  32233261 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgt 32233196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 40219300 - 40219379
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40219300 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40219379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 40219501 - 40219580
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40219501 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40219580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 40219702 - 40219781
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40219702 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40219781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 40219903 - 40219982
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40219903 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40219982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 23669392 - 23669490
Alignment:
Q  25 aataattgaaaatatcata--acagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgataatac 122  Q
    |||||||||||||||||||  ||| ||| |||||||||||| |||||  |||  || ||||||| || |||||||||||||||||| || ||||||||||    
T  23669392 aataattgaaaatatcatataacaaactgattagtacctgaactaag--aag--agtttgcaatgattattggaaagtggcttagaggacttgataatac 23669487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 24041668 - 24041766
Alignment:
Q  25 aataattgaaaatatcata--acagactcattagtacctgagctaagtaaagctagcttgcaattatcattggaaagtggcttagatgatttgataatac 122  Q
    |||||||||||||||||||  ||| ||| |||||||||||| |||||  |||  || ||||||| || |||||||||||||||||| || ||||||||||    
T  24041668 aataattgaaaatatcatataacaaactgattagtacctgaactaag--aag--agtttgcaatgattattggaaagtggcttagaggacttgataatac 24041763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 28299961 - 28300010
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataa 354  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  28299961 ttgtgaagtgtttatgcatggtacataaggaaatgacttatgcataataa 28300010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 11974977 - 11974933
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  11974977 tactgaaaccataagtatggtttaatggttttgatagtgttctat 11974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23755342 - 23755290
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  23755342 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 23755290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 47728445 - 47728393
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||||||||    
T  47728445 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataactt 47728393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 51682015 - 51682063
Alignment:
Q  309 gaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  51682015 gaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 51682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 37319470 - 37319521
Alignment:
Q  306 tgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||| |||||||||| || ||||||||| ||||||||||    
T  37319470 tgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataactt 37319521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 11975147 - 11975103
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||    
T  11975147 tactgaaaccataagtatgatttaatggttttgatagtgttctat 11975103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 11975317 - 11975273
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  11975317 tactgaaactataagtatggtttaatggttttgatagtgttctat 11975273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 11975487 - 11975443
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  11975487 tactgaaaccataagtatggtataatggttttgatagtgttctat 11975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 53595025 - 53594973
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||||||||| || || |||||| ||||||||||    
T  53595025 ttgtgaagtgtttatgcagggtgcataagaaaatggcttatgcataataactt 53594973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 30947920 - 30947961
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  30947920 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 30947961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 33414022 - 33414063
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  33414022 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 33414063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 41192359 - 41192400
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||| | ||||||||||||| |||||||||    
T  41192359 ttgtgaagtgtttatgtacggtgcataaggaaatgacttatg 41192400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 51846789 - 51846830
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| || ||||||    
T  51846789 ttgtgaagtgtttatgcacggtgcataaggaaatggcttatg 51846830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23699384 - 23699332
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||| ||||| || || |||||| ||||||||||    
T  23699384 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23699332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23717839 - 23717787
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||| ||||| || || |||||| ||||||||||    
T  23717839 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23717787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 23736295 - 23736243
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||| ||||| || || |||||| ||||||||||    
T  23736295 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23736243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 26662547 - 26662599
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||| ||||||||||| ||||||||||||| || |||||| | ||||||||    
T  26662547 ttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcacaataactt 26662599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 209565 - 209331
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  209565 tttgataatcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 209466  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  209465 tgaaattattactgaaacaataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaattgttttgtgaagtgtttatgca 209366  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     |||||||||| || ||||||||| ||||||||||    
T  209365 gggtgcataagaaaatgacttatgcataataactt 209331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 171625 - 171513
Alignment:
Q  243 ataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgcatggtgcataaggaattgac 341  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||    
T  171625 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatacagggtgcataaggaaatgac 171526  T
Q  342 ttatgtataataa 354  Q
    ||||| |||||||    
T  171525 ttatgcataataa 171513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 209596 - 209520
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| |||  |||||||| |||||||| ||||||||||    
T  209596 attactgaaaccataagtatagtttaatggttttgataatcttgtatgtgaaaccaagataattgtgtaatggtttt 209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 450440 - 450207
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||   ||||||||||||||||||||||||||||    
T  450440 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacattgttttaaataatgattaagatgttatacac 450341  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    | |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  450340 taaaattattactg-aaccataattatggtttaatgattttgatagtcttctatgagaaaccaaaataattgtctaatggttttatgaagtgtttatgca 450242  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     |||| |||||||| ||||||||| ||||||||||    
T  450241 aggtgtataaggaaatgacttatgcataataactt 450207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 450471 - 450395
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||| ||||| |||| ||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  450471 attactgaaatcataagtatgatttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 450395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 125 - 361
Target Start/End: Original strand, 7169 - 7407
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||  |||||||| |||||||||||||||||||    
T  7169 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaataaaattattattgttacatggttttaaatagtgattaagatgttatacac 7268  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |  |||||||||||||||||||||||||    
T  7269 tgaaattattagtgaaaccataattatgatttaatggttttgatagccttctatgagaaaccaaaataattatcaaatggttttgtgaagtgtttatgca 7368  T
Q  323 tggtgcataaggaattgacttatgtataataacttctcc 361  Q
     ||||||||||||  ||| ||||| ||||||||||||||    
T  7369 gggtgcataaggatctgatttatgcataataacttctcc 7407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 7138 - 7214
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  7138 attactgaaaccataagtatggtttaattgttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 7214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 13590706 - 13590472
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  13590706 tttgatagtcttgtatgtgaaacgaagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 13590607  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg-ttaatggttttgtgaagtgtttatgca 322  Q
    | ||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||| |||||||||||||    
T  13590606 tcaaattattattgaacccataattatggtttaatggttttgatagtcttatatgagagaccaaaataattgtttaatggttttgtaaagtgtttatgca 13590507  T
Q  323 tggtgcataaggaattgacttatgtataataactt 357  Q
     ||||||||||||| ||||||||| ||||||||||    
T  13590506 gggtgcataaggaaatgacttatgcataataactt 13590472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 125 - 354
Target Start/End: Complemental strand, 20372436 - 20372213
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  20372436 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacac 20372337  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    ||||||||||||||||||||||||||||        |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  20372336 tgaaattattactgaaaccataattatg--------gttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgca 20372245  T
Q  323 tggtgcataaggaattgacttatgtataataa 354  Q
     |||||||||| || ||||||||| |||||||    
T  20372244 gggtgcataagaaaatgacttatgcataataa 20372213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 200 - 357
Target Start/End: Original strand, 5077351 - 5077509
Alignment:
Q  200 aataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-ta 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  5077351 aataatgattaagatgttatacactgaaattattactgaaaccatacttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtcta 5077450  T
Q  299 atggttttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||| |||||||||||| ||||||| || |||||||||| ||||||||| ||||||||||    
T  5077451 atgattttgtgaagtgcttatgcagggcgcataaggaaatgacttatgcataataactt 5077509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 20481332 - 20481214
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||||||||||||    
T  20481332 tttgatagtcttgtatgtaaaaccaagataattgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacac 20481233  T
Q  224 tgaaattattactgaaacc 242  Q
    |||||||||||||||||||    
T  20481232 tgaaattattactgaaacc 20481214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 13674011 - 13673899
Alignment:
Q  243 ataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgcatggtgcataaggaattgac 341  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||    
T  13674011 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatacagggtgcataaggaaatgac 13673912  T
Q  342 ttatgtataataa 354  Q
    ||||| |||||||    
T  13673911 ttatgcataataa 13673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 19845893 - 19845814
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||||    
T  19845893 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgt 19845814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 20372467 - 20372391
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  20372467 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 20372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 20481363 - 20481287
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||   ||||||| |||||||| ||||||||||    
T  20481363 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaagataattgtgtaatggtttt 20481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 31529674 - 31529726
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  31529674 ttgtgaagtgtttatgcatggtgcataaggaaatggcttatgcataataactt 31529726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 33097462 - 33097410
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  33097462 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 33097410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 51801742 - 51801794
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  51801742 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 51801794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 13590737 - 13590672
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |||  ||||| || ||||||||    
T  13590737 attactgaaaccataagtatgatttaatggttttgatagtcttgtatgtgaaacgaagataattgt 13590672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 19846130 - 19846086
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  19846130 tactgaaaccataagtatggtttaatggttttgatagtgttctat 19846086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 37639398 - 37639346
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  37639398 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 37639346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 44260575 - 44260523
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||    
T  44260575 ttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 44260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 35198191 - 35198242
Alignment:
Q  306 tgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  35198191 tgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 35198242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 37223310 - 37223273
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223310 tactgaaaccataagtatggtttaatggttttgatagt 37223273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 37223650 - 37223613
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223650 tactgaaaccataagtatggtttaatggttttgatagt 37223613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 37223820 - 37223783
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223820 tactgaaaccataagtatggtttaatggttttgatagt 37223783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 37223990 - 37223953
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223990 tactgaaaccataagtatggtttaatggttttgatagt 37223953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 44688619 - 44688671
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || |||||||    
T  44688619 ttgtgaagtgtttatgcagcgtgcataaggaaatgacttatgcatgataactt 44688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 11421651 - 11421610
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| ||| |||||    
T  11421651 ttgtgaagtgtttatgcacggtgcataaggaaatgatttatg 11421610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 15992413 - 15992442
Alignment:
Q  195 ctttaaataatgattaagatgttatacact 224  Q
    ||||||||||||||||||||||||||||||    
T  15992413 ctttaaataatgattaagatgttatacact 15992442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 19846101 - 19846032
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatg 193  Q
    ||||||||| || ||||| ||||||||||||   |||||||||||| ||||||||||| |||| ||||||    
T  19846101 tttgatagtgttctatgtaaaaccaagataagggtgtaatggttttaaatgaaattattattggtacatg 19846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 37223480 - 37223447
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttga 266  Q
    |||||||||||||| |||||||||||||||||||    
T  37223480 tactgaaaccataagtatggtttaatggttttga 37223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 37224160 - 37224123
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  37224160 tactgaaaccataagtatggtttaatgattttgatagt 37224123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 49936946 - 49936987
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  49936946 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 49936987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 50351860 - 50351819
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  50351860 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 50351819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 51420394 - 51420350
Alignment:
Q  313 tgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||| | ||||||| ||||||||||||| ||||||||||    
T  51420394 tgtttatgcaggatgcataaagaattgacttatgcataataactt 51420350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 125 - 336
Target Start/End: Complemental strand, 7851575 - 7851365
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacac 223  Q
    ||||||||| |||||||| |||||||||||||| ||||||| |||| ||||||||||| ||| |||||||  |||||||||||||||||||||   |||     
T  7851575 tttgatagtcttgtatgtaaaaccaagataattgtgtaatgatttttaatgaaattattatttttacatggttttaaataatgattaagatgt---acat 7851479  T
Q  224 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatgca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||||    
T  7851478 tgaaattattactgaaaccataattatggtttaatggttttgatagtcttctatgagaaaccaaaataattttctaatggttttgtgacgtgtttatgca 7851379  T
Q  323 tggtgcataaggaa 336  Q
     |||||||| ||||    
T  7851378 gggtgcatatggaa 7851365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 32556585 - 32556349
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt--aatgaaattataattgttacatgactttaaataatgattaagat-gttatac 221  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| ||||  ||||||||||| |||||||||||  ||||||||||||||||||| |||||||    
T  32556585 tttgatagtcttgcatgtgaaaccaagataattgtgtaatgattttttaatgaaattattattgttacatggttttaaataatgattaagatagttatac 32556486  T
Q  222 actgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgtgaagtgtttatg 320  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||| | |||| ||||||||||| |||| ||||| |||| ||||||||    
T  32556485 actgaaattattattgaaaccataattattgtttagtggttttgataatcttctatgaaaaactaaaataattgtctaatcgttttctgaattgtttatg 32556386  T
Q  321 catggtgcataaggaattgacttatgtataataactt 357  Q
    || |||||||||| || ||||||||| ||||||||||    
T  32556385 cagggtgcataagaaaatgacttatgcataataactt 32556349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 143 - 308
Target Start/End: Original strand, 18762689 - 18762856
Alignment:
Q  143 gaaaccaagataattatgtaatggttttaa-tgaaattataattgttacatgactttaaataatgattaagatgttatacactgaaattattactgaaac 241  Q
    |||||||| |||||| | |||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  18762689 gaaaccaaaataattgtctaatggttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacactgaaattattactgaaac 18762788  T
Q  242 cataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||| ||||||||||||||||||| ||||||| ||  ||||||||||||||||| ||||||||||||    
T  18762789 cataagtatggtttaatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggttttgt 18762856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 18762605 - 18762716
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||  | |||||||||||||||||    
T  18762605 tttaaataatgattaagatgttatacactgaaattattaatgaaacaataagtatggtttaatgattttgatagtcttcattgagaaaccaaaataattg 18762704  T
Q  296 t-taatggtttt 306  Q
    | ||||||||||    
T  18762705 tctaatggtttt 18762716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 18762496 - 18762607
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||  |||| ||| |||| ||    
T  18762496 tttaaataatgattaagaggttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaacaagataaatg 18762595  T
Q  296 t-taatggtttt 306  Q
    | ||||||||||    
T  18762596 tgtaatggtttt 18762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 27079919 - 27079995
Alignment:
Q  286 aaaataattgt-taatggttttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataacttctcc 361  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||    
T  27079919 aaaataattgtctaatagttttgtgaagtgtttatgcacggtgcataagaaaatgacttatgcataataacttctcc 27079995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 28123142 - 28123076
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||| |||||||||  ||||||||||||||||||||||| ||||||  ||||||||| |||||||    
T  28123142 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgt 28123076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 28123004 - 28122932
Alignment:
Q  237 gaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||||||  |||||||||||||||||||  || ||||||| ||||||||| ||||||| ||||||||||||    
T  28123004 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgt 28122932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 32556611 - 32556551
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    ||||||||||| ||||||||||||||||||||||||||  ||  |||||||| ||||||||    
T  32556611 tgaaaccataaatatggtttaatggttttgatagtcttgcatgtgaaaccaagataattgt 32556551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 18762562 - 18762609
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||    
T  18762562 tttgatagtattgtatgtgaaaacaagataaatgtgtaatggttttaa 18762609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 18762458 - 18762500
Alignment:
Q  130 tagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  18762458 tagtattgcatgtgaaaccaagataattgtgtaatggttttaa 18762500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 22038107 - 22038144
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22038107 tactgaaaccataagtatggtttaatggttttgatagt 22038144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 30908709 - 30908668
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  30908709 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatg 30908668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 15034078 - 15034034
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  15034078 tactgaaaccataagtatggtataatggttttgatagtgttctat 15034034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 28123578 - 28123534
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  28123578 tactgaaaccataagtatggtataatggttttgatagtgttctat 28123534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 7851603 - 7851541
Alignment:
Q  234 actgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    ||||||||||||| | |||||||||| ||||||||||||| |||   ||||||| ||||||||    
T  7851603 actgaaaccataagtgtggtttaatgattttgatagtcttgtatgtaaaaccaagataattgt 7851541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 28123379 - 28123342
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  28123379 tactgaaaccataagtatggtataatggttttgatagt 28123342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 31216719 - 31216678
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  31216719 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 31216678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 18611245 - 18611193
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||||  |||||||| ||| || |||||| ||||||||||    
T  18611245 ttgtgaagtgtttatgcagagtgcataaagaaatgtcttatgcataataactt 18611193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 18762422 - 18762498
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    ||||||||||| |||| |||||||||||||||||  |||| ||  ||  |||||||| |||||||| ||||||||||    
T  18762422 attactgaaacaataagtatggtttaatggtttttttagtattgcatgtgaaaccaagataattgtgtaatggtttt 18762498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 22038313 - 22038345
Alignment:
Q  238 aaaccataattatggtttaatggttttgatagt 270  Q
    ||||||||| |||||||||||||||||||||||    
T  22038313 aaaccataagtatggtttaatggttttgatagt 22038345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 44508953 - 44509117
Alignment:
Q  198 taaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt- 296  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||     
T  44508953 taaataatgattaagatgttatacactgaaattattattgaaaccataattatggtttaatggttttgatagtcttctatgagaaatcaaaataattgtc 44509052  T
Q  297 taatggttttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataacttctcc 361  Q
    ||||||||||||||||||||| | || |||||||| |||| ||||||||| ||||||||||||||    
T  44509053 taatggttttgtgaagtgtttctacagggtgcatatggaactgacttatgcataataacttctcc 44509117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 17225461 - 17225382
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||||    
T  17225461 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgt 17225382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 40005649 - 40005570
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40005649 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40005570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 2522924 - 2522872
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  2522924 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 2522872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 40247294 - 40247346
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  40247294 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 40247346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 40005850 - 40005771
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||||  ||||||||| |||| || ||||||||||||    
T  40005850 tattactgaaaccataagtatggtctaatggttttgatactgttctatgtgaaaccaaactaatggtctaatggttttgt 40005771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 40006045 - 40005972
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||| |||||| |||||||||||||||| ||||||  ||||||||| |||| || ||||||||||||    
T  40006045 tgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgt 40005972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 17057590 - 17057634
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  17057590 tactgaaaccataagtatggtttaatggttttgatagtgttctat 17057634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 17225700 - 17225656
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  17225700 tactgaaaccataagtatggtttaatggttttgatagtgttctat 17225656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 17590635 - 17590591
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  17590635 tactgaaaccataagtatggtttaatggttttgatagtgttctat 17590591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 40006217 - 40006167
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagtcttctataagaaacca 286  Q
    ||||||||||| ||||||||||||||||||||||| ||||||  |||||||    
T  40006217 tgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaacca 40006167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 9852327 - 9852286
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  9852327 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatg 9852286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 10443582 - 10443631
Alignment:
Q  308 tgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||| ||||||||||||| || |||||| ||||||||||    
T  10443582 tgaagtgtttatgcagggtgcataaggaaatggcttatgcataataactt 10443631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 34648137 - 34648178
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  34648137 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatg 34648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 12355479 - 12355427
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||||||||||||||| |||||||||| || |||||||||  |||||||||    
T  12355479 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcgtaataactt 12355427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 7614124 - 7614094
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataagga 335  Q
    |||||||||||||||||||||||||||||||    
T  7614124 ttgtgaagtgtttatgcatggtgcataagga 7614094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 40006131 - 40006097
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagt 270  Q
    ||||||||||| |||||||||||||||||||||||    
T  40006131 tgaaaccataagtatggtttaatggttttgatagt 40006097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 40006174 - 40006124
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagtcttctataagaaacca 286  Q
    ||||||||||| |||||| |||||||||||||||| ||||||  |||||||    
T  40006174 tgaaaccataagtatggtgtaatggttttgatagtgttctatgtgaaacca 40006124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 17057388 - 17057425
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  17057388 tactgaaaccataagtatggttgaatggttttgatagt 17057425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 17225875 - 17225834
Alignment:
Q  236 tgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||    
T  17225875 tgaaaccataagtatggtttaatggttttaatagtgttctat 17225834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 17590837 - 17590800
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  17590837 tactgaaaccataagtatggttgaatggttttgatagt 17590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 30413971 - 30413930
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatg 346  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  30413971 ttgtgatgtgtttatgcacggtgcataaggaaatgacttatg 30413930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 13526680 - 13526732
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||||  || ||||||||| || |||||| ||||||||||    
T  13526680 ttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactt 13526732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 13616215 - 13616267
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    ||||||||||||||||||  || ||||||||| || |||||| ||||||||||    
T  13616215 ttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactt 13616267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 34633330 - 34633382
Alignment:
Q  305 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgtataataactt 357  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||  |||||||    
T  34633330 ttgtgatgtgtttatgcacggtgcataaggaaataacttatgtaccataactt 34633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 582 - 411
Alignment:
Q  139 atgtgaaaccaagataattatgtaatggttttaa-tgaaattataattgttacatgactttaaataatgattaagatgttatacactgaaattattactg 237  Q
    |||||||||||| |||||||| || ||||||||| | ||||||| ||||  |||||  |||||||||||||||| |||||||||||||||||||||||||    
T  582 atgtgaaaccaaaataattatctagtggttttaaataaaattattattgggacatggttttaaataatgattaacatgttatacactgaaattattactg 483  T
Q  238 aaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||| |||||||| ||||||||||||||||   ||  ||||||||| ||||||| ||||||||||||    
T  482 aaaccataagtatggtttcatggttttgatagtctctaatgtgaaaccaaagtaattgtctaatggttttgt 411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 129 - 294
Target Start/End: Complemental strand, 722 - 564
Alignment:
Q  129 atagtattgtatgtgaaaccaagataattatgtaatggtttt-aatgaaattataattgttacatgactttaaataatgattaagatgttatacactgaa 227  Q
    ||||| |||||||| |||||||||||||| |||||||||||| ||||||||||| |||| ||||||  ||||||||||||||||||||       |||||    
T  722 atagtcttgtatgtcaaaccaagataattgtgtaatggttttaaatgaaattattattggtacatggttttaaataatgattaagatg-------ctgaa 630  T
Q  228 attattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataatt 294  Q
    ||||||||||||||||||| ||||||||||| | ||||| ||||||| ||  |||||||||||||||    
T  629 attattactgaaaccataagtatggtttaatag-tttgaaagtcttcaatgtgaaaccaaaataatt 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 792 - 681
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||| |||||||| |||   ||||||| |||||||    
T  792 tttaaataatgattaagatgttatacactgaaattattactgaaatcataagtatcgtttaatgttttttatagtcttgtatgtcaaaccaagataattg 693  T
Q  296 t-taatggtttt 306  Q
    | ||||||||||    
T  692 tgtaatggtttt 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 102 - 23
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  102 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaaataattgtctaatggttttgt 23  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 865 - 790
Alignment:
Q  231 attactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtttt 306  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||  |||||||| |||||||| ||||||||||    
T  865 attactgaaaccataagtatggtt-aatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 835 - 788
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  835 tttgatagtcttgtatgtgaaaccaagataattgtgtaatggttttaa 788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 39141 - 39323
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaatgaaattataattgttacatgactttaaataatgattaagatgttatacact 224  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||  |||||  |||| |    || |||  |||||||||||||||||||||||| ||||    
T  39141 tttgatagtgttgtatgtaaaaccaagataattgtgtaatggttc-aatgattttattaaaaata-atggttttaaataatgattaagatgttatgcact 39238  T
Q  225 gaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||||||||||||||||||  ||||||||||||||||||||| | ||| ||  ||||||||||||||||| ||||||||||||    
T  39239 gaaattattactgaaaccatacgtatggtttaatggttttgataattttcaatgtgaaaccaaaataattgtctaatggttttgt 39323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 39473 - 39552
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||  ||||||||| ||||||| ||||||||||||    
T  39473 tattactgaaaccataagtatggtttaatagttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgt 39552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 39850 - 39929
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||| |  |||||||||||||||||||  | ||||||  ||||||||| ||||||| ||||||||||||    
T  39850 tattactgaaaccatcaacatggtttaatggttttgattatgttctatgtgaaaccaaactaattgtctaatggttttgt 39929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 39112 - 39184
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggtt 304  Q
    |||||||||||||| |||||||||||| |||||||||| || |||   ||||||| |||||||| ||||||||    
T  39112 tactgaaaccataagtatggtttaatgattttgatagtgttgtatgtaaaaccaagataattgtgtaatggtt 39184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 168627 - 168516
Alignment:
Q  198 taaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt- 296  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||  |||||||||||||||||     
T  168627 taaataatgattaagatgttatgcactgaaattattactgaaaccatacgtatggtttaatggttttgatagttttcaatgtgaaaccaaaataattgtc 168528  T
Q  297 taatggttttgt 308  Q
    ||||||||||||    
T  168527 taatggttttgt 168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 168401 - 168322
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||  ||||||||| ||||| | ||||||||||||    
T  168401 tattactgaaaccataagtatgatttaatggttttgatagtgttctatgtgaaaccaaactaattttctaatggttttgt 168322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 168727 - 168665
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    |||||||||||||| ||||||||||||||||||||||| || |||   ||||||| |||||||    
T  168727 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattg 168665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 74; Significance: 9e-34; HSPs: 12)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 16195 - 16308
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||| ||||||| ||  ||||||||||||||||    
T  16195 tttaaataatgattaagatgttatacactgaaattattactaaaactataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaataattg 16294  T
Q  296 t-taatggttttgt 308  Q
    | ||||||||||||    
T  16295 tgtaatggttttgt 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 22770 - 22864
Alignment:
Q  202 taatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    ||||||||  |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| || |||  |||||||||||||||||    
T  22770 taatgattttgatgttatccactgaaattattactgaaaccataagtatggtttaatgattttgatagtattgtatgtgaaaccaaaataattgt 22864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 16106 - 16182
Alignment:
Q  216 ttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataa 292  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||  |||||||||||||    
T  16106 ttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaaaataa 16182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 22584 - 22680
Alignment:
Q  212 gatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttg 307  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||  |||||||| |||| ||| |||||||||||    
T  22584 gatgttatacactaaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggttttg 22680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 22877 - 22931
Alignment:
Q  213 atgttatacactgaaattattactgaaaccataattatggtttaatggttttgat 267  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22877 atgttatacactgaaattattactgaaaccataagtatggtttaatggttttgat 22931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 22680 - 22764
Alignment:
Q  212 gatgttatacactgaaattattactgaaaccataa----ttatggtttaatggttttgatagtcttctataagaaaccaaaataa 292  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| || |||  |||||||| ||||    
T  22680 gatgttatacactgaaattattactgaaaccataagtatttatggtttaatggttttgatagtattgtatgtgaaaccaagataa 22764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 16152 - 16199
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttttaa 172  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  16152 tttgatagtattgtatgtgaaaccaaaataaatatgtaatggttttaa 16199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 22634 - 22679
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt 170  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  22634 tttgatagtattgtatgtgaaaccaagataaatgtgtaatggtttt 22679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 16511 - 16589
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttg 307  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||  ||  |||||||| || ||||| |||||||||||    
T  16511 tattactgaaaccataagtatggtttaatggttttaatagtattaaatgtgaaaccaagattattgtgtaatggttttg 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 16056 - 16101
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt 170  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||    
T  16056 tttgatagtattgtatctgaaaccaagataaatgtgtaatggtttt 16101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 22734 - 22779
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggtttt 170  Q
    ||||||||||||||||||||||||||||||| | ||||||| ||||    
T  22734 tttgatagtattgtatgtgaaaccaagataaatgtgtaatgatttt 22779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 22830 - 22870
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatg 165  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  22830 tttgatagtattgtatgtgaaaccaaaataattgtgtaatg 22870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 10751 - 10638
Alignment:
Q  196 tttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattg 295  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||| ||| ||  |||||||||||||||     
T  10751 tttatataatgattaagatgttatgcactgaaattattactgaaaccatacgtatagtttaatggttttgatagttttcaatgtgaaaccaaaataattt 10652  T
Q  296 t-taatggttttgt 308  Q
    | ||||||||||||    
T  10651 tctaatggttttgt 10638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 10513 - 10434
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||  ||||||||| ||||||| ||||||||||||    
T  10513 tattactgaaaccataagtatggtttaatggttttggtagtgttctatgtgaaaccaaactaattgtctaatggttttgt 10434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 10136 - 10057
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| | ||||| ||||||||||||    
T  10136 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaacttattgtctaatggttttgt 10057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 10831 - 10758
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttt 305  Q
    |||||||||||||| ||||||||||||||||||||||| || |||   ||||||| |||||||| |||||||||    
T  10831 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattgtgtaatggttt 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 10802 - 10758
Alignment:
Q  125 tttgatagtattgtatgtgaaaccaagataattatgtaatggttt 169  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||    
T  10802 tttgatagtgttgtatgtaaaaccaagataattgtgtaatggttt 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 1228 - 1162
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt 296  Q
    |||||| |||||||||  ||||||||||||||||||||||| ||||||  ||||||||| |||||||    
T  1228 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgt 1162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 1090 - 1018
Alignment:
Q  237 gaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    |||||||||  |||||||||||||||||||  || ||||||| ||||||||| ||||||| ||||||||||||    
T  1090 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgt 1018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 1863 - 1819
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  1863 tactgaaaccataagtatggtataatggttttgatagtgttctat 1819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 1664 - 1620
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||    
T  1664 tactaaaaccataagtatggtataatggttttgatagtgttctat 1620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 6450 - 6373
Alignment:
Q  230 tattactgaaaccataattatggtttaatggttttgatagtcttctataagaaaccaaaataattgt-taatggttttgt 308  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||  ||||  ||||||||| | ||||||||||||    
T  6450 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaa--aaaataattatctaatggttttgt 6373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 5973 - 5929
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  5973 tactgaaaccataagtatggtttaatggttttgatagtgttctat 5929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 8864 - 8908
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||    
T  8864 tactgaaaccataagtatggttgaatggttttgatagtgttctat 8908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 126256 - 126300
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  126256 tactgaaaccataagtatggtttaatggttttgatagtgttctat 126300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 126426 - 126470
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagtcttctat 277  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  126426 tactgaaaccataaatatggtttaatggttttgatagtgttctat 126470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 128579 - 128616
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  128579 tactgaaaccataagtatggtttaatggttttgatagt 128616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 19758 - 19721
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19758 tactgaaaccataagtatggtttaatggttttgatagt 19721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 28872 - 28835
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28872 tactgaaaccataagtatggtttaatggttttgatagt 28835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 31018 - 30981
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31018 tactgaaaccataagtatggtttaatggttttgatagt 30981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 33393 - 33430
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33393 tactgaaaccataagtatggtttaatggttttgatagt 33430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 33903 - 33940
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33903 tactgaaaccataagtatggtttaatggttttgatagt 33940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 34073 - 34110
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34073 tactgaaaccataagtatggtttaatggttttgatagt 34110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 19418 - 19385
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttga 266  Q
    |||||||||||||| |||||||||||||||||||    
T  19418 tactgaaaccataagtatggtttaatggttttga 19385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 19588 - 19551
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  19588 tactgaaaccataagtatgatttaatggttttgatagt 19551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 28702 - 28665
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  28702 tactgaaaccataagtatggtttaatgattttgatagt 28665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 33563 - 33600
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  33563 tactgaaaccataagtatgatttaatggttttgatagt 33600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 34243 - 34280
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| | |||||||||||||||||||||    
T  34243 tactgaaaccataagtgtggtttaatggttttgatagt 34280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 34583 - 34616
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttga 266  Q
    |||||||||||||| |||||||||||||||||||    
T  34583 tactgaaaccataagtatggtttaatggttttga 34616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 347 - 310
Alignment:
Q  233 tactgaaaccataattatggtttaatggttttgatagt 270  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  347 tactgaaaccataagtatggtataatggttttgatagt 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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