View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_54 (Length: 475)
Name: NF20384_low_54
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 53682609 - 53683026
Alignment:
| Q |
16 |
caattgcaatgctcattctcttttgccagttgagttgcacttcaccagcatattgaccatggagatgagaaagcagacttagatttggcatgtaatcata |
115 |
Q |
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| T |
53682609 |
caattgcaatgctcattctcttttgccagttgagttgcacttcaccagcatattgaccatggagatgagaaagcagacttagatttggcatgtaatcata |
53682708 |
T |
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| Q |
116 |
gacaataagcctttgatcatcgccaacacaatagccccttagacctaacaaatttttgtgcctaacccttccaagcacttcaacttctacagcaaattcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53682709 |
gacaataagcctttgatcatcgccaacacaatagccccttagacctaacaaatttttgtgcctaacccttccaagcacttcaacttctacagcaaattcc |
53682808 |
T |
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| Q |
216 |
atctctgcctttgagttcattgctttcagtttcttcactgctatctgtaatttccaatgaaaagagagttaatggcaaagacaaggactttgtcacttca |
315 |
Q |
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| T |
53682809 |
atctctgcctttgagttcattgctttcagtttcttcactgctatctgtaatttccaatgaaaagagagttaatggcaaagacaaggactttgtcacttca |
53682908 |
T |
|
| Q |
316 |
tattaaagacatgttccgtgtccgatatgtgttcagtggttacattcaccgattccattttctaaaattactatcgatgtcaatgtcgtgtctacatcac |
415 |
Q |
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| T |
53682909 |
tattaaagacatgttccgtgtccgatatgtg-tcagtggttacgttcaccgattccattttctaaaattactatcgatgtcaatgtcgtgtctacatcac |
53683007 |
T |
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| Q |
416 |
caaattaatgtcctaatga |
434 |
Q |
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| T |
53683008 |
caaattaatgttctaatga |
53683026 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 46146645 - 46146714
Alignment:
| Q |
159 |
cctaacaaatttttgtgcctaacccttccaagcacttcaacttctacagcaaattccatctctgcctttg |
228 |
Q |
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||||||||||| || ||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||| |
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| T |
46146645 |
cctaacaaattcttatgcctcacccttcctagtacttccacttcaactgcaaattccatctctgcttttg |
46146714 |
T |
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