View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_56 (Length: 467)
Name: NF20384_low_56
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 271 - 460
Target Start/End: Original strand, 21113529 - 21113718
Alignment:
| Q |
271 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21113529 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
21113628 |
T |
|
| Q |
371 |
caaaaacatcagaatttgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaatcttatacatggcaatcagtcctttg |
460 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21113629 |
aaaaaacatcagcatttgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaatctaatacatggcaatcagtcctttg |
21113718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 21113278 - 21113424
Alignment:
| Q |
20 |
tactacacctatcccaatagtataatacacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21113278 |
tactacacctatcccaatagtataatacacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcat |
21113377 |
T |
|
| Q |
120 |
caatttcataatccaaattgaatgctcgtggacatatcatgacatag |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21113378 |
caatttcataatccaaattgaatgctcgtggacatatcatgacatag |
21113424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 21123301 - 21123367
Alignment:
| Q |
278 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcg |
344 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
21123301 |
tctccaaaacctctttgcctctttttttgttcttcattttattttctgtctcatatgcaacttctcg |
21123367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 21143221 - 21143297
Alignment:
| Q |
278 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
354 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |||||| |||| |||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
21143221 |
tctctaaaacctctctatctcttttgttattgttcgttttgttttcttcttcatacgcaacttctcgcatcacacat |
21143297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 21149044 - 21149114
Alignment:
| Q |
284 |
aaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
354 |
Q |
| |
|
||||||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
21149044 |
aaacctccctgtctgttttgctattgttcattttattttcttccttgtatgcaacttcacgcatcacacat |
21149114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 21143345 - 21143393
Alignment:
| Q |
387 |
tgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaat |
435 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
21143345 |
tgaaaagcttataaaaagctttaacttattgccaaaggatccagttaat |
21143393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University