View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_57 (Length: 460)
Name: NF20384_low_57
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_57 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 31655139 - 31655581
Alignment:
| Q |
18 |
aaaagtatatatcttgagaaatttcttactacacgtacttatgttacatcgaaattacatatcttgtgtgcccttcacgcacccctttggcctgtgtgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
31655139 |
aaaagtatatatcttgagaaatttcttactacacgtacttatgttacatcgaaattacatatcttgtgtgctcttcacgcactcctttggcctgtgtgaa |
31655238 |
T |
|
| Q |
118 |
atgaaactgatcgatgaacttttgtctaaatactccaaaatgggtacaaattttaaatttgcaagttggaagtaccaagttgaataaaaggtcgtgcacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31655239 |
atgaaactgatcgatgaacttttgtctaaatactccaaa-tgggatcaaattttaaatttgcaagtaggaagtaccaagttgaataaaaggtcgtgcacc |
31655337 |
T |
|
| Q |
218 |
tctttttctctcttcatatccatcattatttaacctatagttc-tagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31655338 |
tctttttctctcttcatatccatcattatttaacctatagttcctagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggag |
31655437 |
T |
|
| Q |
317 |
aatcagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtattaactt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31655438 |
aatcagcttttgcttcctacaaattacggtaaaaaggcaatggaagaagagctaataagaggacgtgacatggcaaatcaattacttgaagtattaactt |
31655537 |
T |
|
| Q |
417 |
ttgatgataagtcaaatattagagaagttaaagggtcaaatatt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31655538 |
ttgatgataagtcaaatattagagaagttaaagggtcaaatatt |
31655581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 31 - 456
Target Start/End: Original strand, 31648131 - 31648557
Alignment:
| Q |
31 |
ttgagaaatttcttacta-cacgtacttatgttacatcgaaattacatatcttgtgtgcccttcacgcacccctttggcctgtgtgaaatgaaactgatc |
129 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| | |||| |||||| | ||| ||||||| |||||| ||| ||||| |||||||||||||| |||| | |
|
|
| T |
31648131 |
ttgataaatttcttactaacacgtagttaattcacattgaaatttcgtatgttgtgtgttcttcacacacgt-tttggtctgtgtgaaatgaacctga-c |
31648228 |
T |
|
| Q |
130 |
gatgaacttttgtctaaatactccaaaatgggtacaaattttaaatttgcaagttggaag--taccaagttgaataaaaggtcgtgcacctctttttctc |
227 |
Q |
| |
|
| ||||||||||||| ||||| | ||||||| ||| |||||||||||||||| ||||| || |||||||||||||||| | | |||| ||||| | |
|
|
| T |
31648229 |
taggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttaacaagttgaataaaaggccatatccctccttttc-c |
31648327 |
T |
|
| Q |
228 |
tcttcatatccatca-----ttatttaaccta--tagtt-ctagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggagaat |
319 |
Q |
| |
|
||||||||||||| | ||||||| |||| ||||| |||||||||| || || | ||||||||||| | || || |||| ||||||||| |
|
|
| T |
31648328 |
tcttcatatccattaataccttatttagcctagctagttactagttatag-aaggtgttaattaatttaca------ctaccaaaaatataatggagaat |
31648420 |
T |
|
| Q |
320 |
cagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtattaacttttg |
419 |
Q |
| |
|
||||| |||||| |||||||| || ||||| ||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31648421 |
atgctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtattaacttttg |
31648520 |
T |
|
| Q |
420 |
atgataagtcaaatattagagaagttaaagggtcaaa |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31648521 |
atgataagtcaaatattagagaagttaaagggtcaaa |
31648557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 31663153 - 31663013
Alignment:
| Q |
311 |
atggagaatcagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtat |
410 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| || || || ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| | | |
|
|
| T |
31663153 |
atggagaatctgctttggcttccaacaaatgac---aagaaggcaatggaagatgagcttataagaggacgtgacatggcaaatcaattacttgaggcac |
31663057 |
T |
|
| Q |
411 |
taacttttgatgataagtcaaatattagagaagttaaagggtcaaat |
457 |
Q |
| |
|
| |||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
31663056 |
tgacttatgatgataagtcaaatat---agaagtgaaagggtcaaat |
31663013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University