View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_6 (Length: 694)

Name: NF20384_low_6
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_6
NF20384_low_6
[»] chr2 (1 HSPs)
chr2 (17-687)||(8931789-8932458)
[»] chr4 (3 HSPs)
chr4 (505-587)||(49443576-49443658)
chr4 (534-595)||(50892220-50892281)
chr4 (534-595)||(48751378-48751439)
[»] chr8 (2 HSPs)
chr8 (534-595)||(31584881-31584942)
chr8 (526-582)||(18332040-18332096)
[»] chr3 (2 HSPs)
chr3 (514-595)||(36198899-36198980)
chr3 (537-574)||(23548584-23548621)
[»] chr1 (1 HSPs)
chr1 (512-595)||(43710570-43710653)
[»] chr5 (1 HSPs)
chr5 (505-595)||(43427779-43427869)
[»] chr7 (1 HSPs)
chr7 (513-593)||(253058-253137)


Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 17 - 687
Target Start/End: Complemental strand, 8932458 - 8931789
Alignment:
Q  17 acacacaatgtaatcaaaacgatgaaatagataacaatgaatgtggtcgaatttgagatgaaagaatgatgtgtctccaatgaagcccatggatagaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  8932458 acacacaatgtaatcaaaacgatgaaatagataacaatgaatgtggtcgaatttgagatgaaagaatgatgtgtctccaatgaagcctatggacagaatt 8932359  T
Q  117 tccttcataatttgagctcaaaatgaacttctgttctggaatccttttaaacacaaattgaaaattttggatagttctgcagctgttttcccatgaaatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932358 tccttcataatttgagctcaaaatgaacttctgttctggaatccttttaaacacaaattgaaaattttggatagttctgcagctgttttcccatgaaatt 8932259  T
Q  217 ctaccataagcaaattatttctgaatattannnnnnnngattgagtttccaataattaatttcacaaaccaaagattagtctattgttcttgttctcttg 316  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932258 ctaccataagcaaattatttctgaatattattttttt-gattgagtttccaataattaatttcacaaaccaaagattagtctattgttcttgttctcttg 8932160  T
Q  317 ctatcaaatgaatatgttgttgcaatgttttgctcccatgataacttgaaaaggtttgtttgataatttattctatcaaatgctgcttgtattgaccatt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8932159 ctatcaaatgaatatgttgttgcaatgttttgctcccatgataacttgaaaaggtttgtttgattatttattctatcaaatgctgcttgtattgaccatt 8932060  T
Q  417 ttacagcgaggttttgatttgctacattgagtttatatgtttagtagacatggtttgctgtcttactttgatgtaatccaattattggactaataaccat 516  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932059 ttacagcgaggttttgatttgctacattgagtttatttgtttagtagacatggtttgctgtcttactttgatgtaatccaattattggactaataaccat 8931960  T
Q  517 tttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcaccttgaggttacagtgcatacttt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8931959 tttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcaccttgaggttacagtgcatacttt 8931860  T
Q  617 atgctgagatgttttcatgaaagcaggtatgaagtgccgaaccacgttcactctgtgcgttattcttatct 687  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  8931859 atgctgagatgttttcatgaatgcaggtatgaggtgccgaaccacgttcaatctgtgcgttatttttatct 8931789  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 505 - 587
Target Start/End: Original strand, 49443576 - 49443658
Alignment:
Q  505 actaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagt 587  Q
    |||||||||||||||||| ||||||| | |||||||||||||  | |||||| |||||||| |||||||||||||||| ||||    
T  49443576 actaataaccattttacaaccgtccccgaggggatttgaactttgtaccttgaggttacaaggctaaactcttaccacagagt 49443658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 595
Target Start/End: Complemental strand, 50892281 - 50892220
Alignment:
Q  534 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||    
T  50892281 ggggattagaactcagcaccttgaggttacaaggctaagctcttaccactgagctagcacct 50892220  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 48751378 - 48751439
Alignment:
Q  534 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    ||||||| |||||||||| |||| |||||||||||||| ||||| ||||  || ||||||||    
T  48751378 ggggattcgaactcagcaacttgaggttacaatgctaagctcttgccacttagctagcacct 48751439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 595
Target Start/End: Complemental strand, 31584942 - 31584881
Alignment:
Q  534 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    |||||||||||||||| |||||| |||||||||||||| |||||||||  ||| ||||||||    
T  31584942 ggggatttgaactcagtaccttgaggttacaatgctaagctcttaccattgagctagcacct 31584881  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 582
Target Start/End: Complemental strand, 18332096 - 18332040
Alignment:
Q  526 gtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccac 582  Q
    ||||||| ||| |||| ||||||| |||||| |||||||||||||| ||||| ||||    
T  18332096 gtcccagagggtatttaaactcagtaccttgaggttacaatgctaagctcttgccac 18332040  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 595
Target Start/End: Original strand, 36198899 - 36198980
Alignment:
Q  514 cattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    ||||||||| || |||| | |||||||||||||||| |||||| |||||||| ||||| ||||||||||  || ||||||||    
T  36198899 cattttacaaccatccccgaggggatttgaactcagtaccttgaggttacaaggctaagctcttaccactaagctagcacct 36198980  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 574
Target Start/End: Complemental strand, 23548621 - 23548584
Alignment:
Q  537 gatttgaactcagcaccttgcggttacaatgctaaact 574  Q
    |||||||||||||||||| | |||||||||||||||||    
T  23548621 gatttgaactcagcacctcgaggttacaatgctaaact 23548584  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 595
Target Start/End: Complemental strand, 43710653 - 43710570
Alignment:
Q  512 accattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    ||||||| ||| | ||||| | ||||||| ||||||| ||||| | |||||||| ||||| |||||||||||| | ||||||||    
T  43710653 accatttcacaactgtccccgaggggattcgaactcaacacctcggggttacaaggctaatctcttaccaccgtgctagcacct 43710570  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 595
Target Start/End: Complemental strand, 43427869 - 43427779
Alignment:
Q  505 actaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 595  Q
    |||||||||||||||||| ||||  |   ||||||||||||||    ||||| |||||||| || ||||||||||||| ||| ||||||||    
T  43427869 actaataaccattttacaaccgtatccaaggggatttgaactccctcccttgaggttacaaggccaaactcttaccactgagctagcacct 43427779  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 513 - 593
Target Start/End: Original strand, 253058 - 253137
Alignment:
Q  513 ccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcac 593  Q
    |||||||||| ||||||| | |||||||||||||  | |||||  |||||||| ||||| |||||||||| ||| ||||||    
T  253058 ccattttacaaccgtccccg-ggggatttgaactttgtaccttaaggttacaaggctaagctcttaccactgagctagcac 253137  T

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