View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_61 (Length: 455)
Name: NF20384_low_61
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 440
Target Start/End: Original strand, 34504019 - 34504456
Alignment:
| Q |
5 |
ccaagaaaatcgtccataaattgtaatagtgcataaatcgcgtggcaactactagcctgcaaaacacaatcatcacagttcaattcgatcaaattaactt |
104 |
Q |
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| T |
34504019 |
ccaaaaaaatcgtccatgagt-gtaatagtgcataaatcgcgtggcaactactagcctgcaaaacataatcatcacagttcaattcgatcaaattaact- |
34504116 |
T |
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| Q |
105 |
agaggacgagtccaacaaatgaatggcacattgttgcaataagaaagcttccattaaaa--atatatatgttccatggcttgataaattacgaacatgaa |
202 |
Q |
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| T |
34504117 |
agaggacgagtccaacaaatgaatggcacattgttgcaataagaaagcttccattaaaaaaatatatatgttccatggcttgataaattacgaacatgaa |
34504216 |
T |
|
| Q |
203 |
ttgcaatctaaacaagagagtgatgtctttatttaaaattcataccagtcctatcaactacaacttatgaataatagcaacacaatatttagcttcatcc |
302 |
Q |
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|||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34504217 |
ttgcaacctaaacaagagagtgatgtgtttctttaaaattcataccagtcctatcaactacaacttatgaataatagcaacacaatatttagcttcatcc |
34504316 |
T |
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| Q |
303 |
caagcatcctttacacaaccccatgatacttcatctcaagttcaacatttagcttcctttgagtttaccaatctcattcttgctagaagtcgtcattaag |
402 |
Q |
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|| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34504317 |
caggcatcctttacacaacctcatgaaacttcatctcaaattcaacatttagcttcctttgagtttaccaatctcattcttgctggaagtcgtcattaaa |
34504416 |
T |
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| Q |
403 |
atatcatccacac--agaagtagatgggcagtgaatttct |
440 |
Q |
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||||||||||||| ||||||||||||||| ||||||||| |
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| T |
34504417 |
atatcatccacacatagaagtagatgggcaatgaatttct |
34504456 |
T |
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