View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_62 (Length: 452)
Name: NF20384_low_62
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 67 - 392
Target Start/End: Complemental strand, 35455044 - 35454713
Alignment:
| Q |
67 |
attaacttgtccatatctgtatacatatgtaaattcgtgtgattacttgttaagatgttgcaattaatataaattaatttcaagacatccatttcgtatc |
166 |
Q |
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| T |
35455044 |
attaacttttccatatctgtatatatatgtaaattcgtgtgattacttgttaagatgttgcaataaatataaattaatttcaagacatccatttcgtatc |
35454945 |
T |
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| Q |
167 |
tagccctgctatttttccagtttggttgtcataaaaacggcaatatatttatt-aatttcattatcttgatgctccatcaccaccaaattccaatggatc |
265 |
Q |
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| T |
35454944 |
tagccctgctctttttccgatttggttgcaataaaaacgacaatagatatattaaatttcattatcttgatgctccatcaccaccaaattctaatagatc |
35454845 |
T |
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| Q |
266 |
aagaatccatgcttgtaaatttctttatactttctcatattgaatgcaactctaatataacgtgacatgctcaaatgaca-agacatttcttaact---- |
360 |
Q |
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| T |
35454844 |
acgaatccatgattgtaaatttctttatactttctcatattgaatgcaactctaatataacatgacgtgctcaaatgacagagacatttcttaacttgta |
35454745 |
T |
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| Q |
361 |
tgtattattgccagaattcaaaatacatattt |
392 |
Q |
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| T |
35454744 |
tgtattattgccaaaattcaaaatacatattt |
35454713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35455081 - 35455048
Alignment:
| Q |
1 |
tcatccttgctaatttactctgtgatttctatgt |
34 |
Q |
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| T |
35455081 |
tcatccttgctaatttactctgtgatttctatgt |
35455048 |
T |
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