View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_63 (Length: 448)

Name: NF20384_low_63
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_63
NF20384_low_63
[»] chr7 (17 HSPs)
chr7 (25-329)||(4817700-4818004)
chr7 (25-288)||(4785271-4785534)
chr7 (339-417)||(40521203-40521281)
chr7 (337-417)||(7298632-7298712)
chr7 (337-425)||(19804794-19804882)
chr7 (340-419)||(28948991-28949069)
chr7 (241-329)||(4698845-4698933)
chr7 (338-418)||(16979604-16979683)
chr7 (340-411)||(40521016-40521086)
chr7 (340-406)||(7298835-7298900)
chr7 (16-69)||(4698617-4698670)
chr7 (16-69)||(4862525-4862578)
chr7 (343-412)||(46567960-46568028)
chr7 (340-406)||(19805612-19805678)
chr7 (371-417)||(46568145-46568191)
chr7 (346-419)||(47478367-47478436)
chr7 (236-321)||(4862270-4862355)
[»] chr2 (21 HSPs)
chr2 (340-428)||(16115220-16115308)
chr2 (339-428)||(42028754-42028843)
chr2 (340-428)||(31860079-31860167)
chr2 (338-417)||(42028576-42028655)
chr2 (340-428)||(7317635-7317723)
chr2 (340-421)||(2059490-2059571)
chr2 (340-417)||(15332849-15332926)
chr2 (341-419)||(3671822-3671899)
chr2 (339-417)||(16115045-16115123)
chr2 (339-417)||(31470586-31470663)
chr2 (340-417)||(13280022-13280099)
chr2 (340-417)||(31860272-31860349)
chr2 (340-419)||(31470763-31470841)
chr2 (340-406)||(7317833-7317899)
chr2 (340-406)||(36059285-36059351)
chr2 (340-417)||(2059671-2059748)
chr2 (340-417)||(38086154-38086231)
chr2 (339-401)||(13279839-13279901)
chr2 (340-406)||(38085967-38086032)
chr2 (340-397)||(15330449-15330505)
chr2 (340-417)||(3672010-3672087)
[»] scaffold0214 (2 HSPs)
scaffold0214 (337-428)||(11803-11894)
scaffold0214 (339-417)||(11625-11703)
[»] chr5 (31 HSPs)
chr5 (340-428)||(42630711-42630799)
chr5 (340-425)||(26534506-26534591)
chr5 (340-428)||(130254-130342)
chr5 (338-417)||(33377835-33377914)
chr5 (339-425)||(8323706-8323792)
chr5 (340-417)||(791592-791669)
chr5 (340-417)||(26534685-26534762)
chr5 (343-417)||(35454637-35454710)
chr5 (340-417)||(5146690-5146767)
chr5 (337-417)||(19898941-19899021)
chr5 (339-419)||(35454450-35454529)
chr5 (338-401)||(6518201-6518264)
chr5 (342-417)||(8323895-8323970)
chr5 (340-417)||(8489123-8489200)
chr5 (340-417)||(13823335-13823412)
chr5 (339-412)||(14388512-14388584)
chr5 (343-411)||(19897228-19897295)
chr5 (340-419)||(5146504-5146582)
chr5 (339-417)||(40881791-40881867)
chr5 (339-417)||(130435-130513)
chr5 (340-406)||(14069861-14069926)
chr5 (340-417)||(228717-228794)
chr5 (339-397)||(791810-791868)
chr5 (343-417)||(42630894-42630968)
chr5 (340-417)||(6518390-6518466)
chr5 (343-401)||(228987-229044)
chr5 (357-417)||(40882006-40882066)
chr5 (340-406)||(13823150-13823215)
chr5 (371-417)||(27319654-27319700)
chr5 (387-428)||(791770-791811)
chr5 (343-403)||(27319482-27319541)
[»] chr1 (26 HSPs)
chr1 (340-428)||(10227888-10227976)
chr1 (337-417)||(50892960-50893040)
chr1 (344-422)||(19059378-19059456)
chr1 (340-417)||(28217706-28217783)
chr1 (338-417)||(10227710-10227789)
chr1 (339-417)||(48871424-48871502)
chr1 (340-417)||(23346419-23346496)
chr1 (340-419)||(50893148-50893226)
chr1 (340-418)||(7062183-7062260)
chr1 (339-417)||(26552179-26552257)
chr1 (340-418)||(48871247-48871324)
chr1 (340-412)||(48752586-48752657)
chr1 (342-425)||(26551992-26552075)
chr1 (340-418)||(28217530-28217607)
chr1 (341-417)||(39669245-39669321)
chr1 (339-411)||(42180570-42180641)
chr1 (339-418)||(4156891-4156969)
chr1 (341-412)||(50905104-50905175)
chr1 (371-417)||(7062038-7062084)
chr1 (348-417)||(19059565-19059634)
chr1 (349-418)||(23346607-23346675)
chr1 (338-411)||(41834069-41834141)
chr1 (338-417)||(41833872-41833951)
chr1 (341-417)||(50904992-50905070)
chr1 (371-417)||(42180759-42180805)
chr1 (370-419)||(39669086-39669135)
[»] chr6 (8 HSPs)
chr6 (340-425)||(33022164-33022249)
chr6 (341-418)||(7789856-7789933)
chr6 (340-417)||(21389021-21389098)
chr6 (341-417)||(33022355-33022431)
chr6 (343-418)||(21389208-21389282)
chr6 (351-418)||(7789678-7789744)
chr6 (341-419)||(29859735-29859813)
chr6 (341-406)||(28472559-28472624)
[»] chr4 (14 HSPs)
chr4 (340-425)||(40533963-40534048)
chr4 (340-428)||(3102540-3102628)
chr4 (341-428)||(13690216-13690303)
chr4 (337-425)||(9231577-9231665)
chr4 (339-418)||(3102726-3102805)
chr4 (340-417)||(40534150-40534227)
chr4 (340-417)||(18381496-18381573)
chr4 (340-411)||(5121000-5121071)
chr4 (340-406)||(11147014-11147080)
chr4 (340-417)||(18936864-18936941)
chr4 (340-417)||(37177813-37177890)
chr4 (340-417)||(18936676-18936752)
chr4 (359-402)||(9231782-9231825)
chr4 (340-405)||(37177624-37177688)
[»] chr3 (13 HSPs)
chr3 (339-428)||(33219071-33219160)
chr3 (340-425)||(33214618-33214703)
chr3 (337-417)||(36635425-36635505)
chr3 (342-425)||(10598810-10598893)
chr3 (339-417)||(27073095-27073173)
chr3 (340-417)||(33214443-33214520)
chr3 (340-417)||(19580497-19580574)
chr3 (340-425)||(36274304-36274389)
chr3 (347-417)||(36274126-36274196)
chr3 (340-401)||(27072913-27072974)
chr3 (343-406)||(36635241-36635303)
chr3 (337-417)||(11650997-11651077)
chr3 (340-402)||(10599000-10599062)
[»] chr8 (13 HSPs)
chr8 (338-418)||(2814430-2814510)
chr8 (337-425)||(37994705-37994793)
chr8 (337-417)||(14193512-14193591)
chr8 (340-417)||(397192-397269)
chr8 (340-417)||(37994895-37994972)
chr8 (340-417)||(41539770-41539847)
chr8 (340-425)||(44036814-44036899)
chr8 (340-406)||(41539969-41540034)
chr8 (340-417)||(14193324-14193400)
chr8 (340-406)||(2814243-2814308)
chr8 (337-406)||(397004-397072)
chr8 (356-406)||(25101746-25101796)
chr8 (337-418)||(40587976-40588057)
[»] scaffold0135 (2 HSPs)
scaffold0135 (337-425)||(37443-37531)
scaffold0135 (359-402)||(37648-37691)
[»] scaffold0140 (1 HSPs)
scaffold0140 (340-406)||(15847-15913)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 4817700 - 4818004
Alignment:
Q  25 ttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaaaggatagaattggcacatt 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4817700 ttagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaaaggatagaattgtcacatt 4817799  T
Q  125 ttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactgaagaacaacctttgttttc 224  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4817800 ttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactgaagaacaacctttgttttc 4817899  T
Q  225 ataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgtatattttattac 324  Q
      ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4817900 tgaaaattttcatgctacggtgttttctgagattggaaatccaaaagcacgatagatatttgccactatttctaaaattttcgaatgtatattttattac 4817999  T
Q  325 aaaat 329  Q
    |||||    
T  4818000 aaaat 4818004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 4785271 - 4785534
Alignment:
Q  25 ttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaaaggatagaattggcacatt 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4785271 ttagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaaaggatagaattgtcacatt 4785370  T
Q  125 ttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactgaagaacaacctttgttttc 224  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4785371 ttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactgaagaacaacctttgttttc 4785470  T
Q  225 ataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgcc 288  Q
      |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  4785471 tgaaaattttcatgctacggtgttttctgagaatggaaatccaaaagcacgatagatatttgcc 4785534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 40521281 - 40521203
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 40521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 7298632 - 7298712
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  7298632 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 19804794 - 19804882
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  19804794 tatgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccat 19804882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 28949069 - 28948991
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcattttttttc 28948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 4698845 - 4698933
Alignment:
Q  241 acggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgtatattttattacaaaat 329  Q
    |||||||||||||||||||  ||||||| ||||||||||||| ||  ||||  ||||||||||||| |||||||||||||||| |||||    
T  4698845 acggtgttttctgagattgggaatccaagagcacgatagataattctcactcattctaaaatttccaaatgtatattttattaaaaaat 4698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 16979683 - 16979604
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    |||||||||| ||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  16979683 atgagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 40521016 - 40521086
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 411  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 7298900 - 7298835
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacac 7298835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 4698617 - 4698670
Alignment:
Q  16 gttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4698617 gttggagctttagagtttgcattgcagttggagataagtgaggaggatactaag 4698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 4862578 - 4862525
Alignment:
Q  16 gttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag 69  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4862578 gttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag 4862525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 412  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 19805678 - 19805612
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||  |||||||||| |||| ||| ||||||||||||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacac 19805612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 46568191 - 46568145
Alignment:
Q  371 tatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 46568145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 47478367 - 47478436
Alignment:
Q  346 tttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    ||||||||||| |||||||  ||| ||||||||||||||||||||||||   ||||||||| ||||| ||||||    
T  47478367 tttttgtgtagaaacgaacttaac-tatcattcttacaaacaacaaatt---acatgacacatcattttttttc 47478436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 4862355 - 4862270
Alignment:
Q  236 atgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgtatattttat 321  Q
    |||||||||||||||||||||| |  ||||||| |||| |||||||| ||| ||||  | |||||||||   ||||||| ||||||    
T  4862355 atgctacggtgttttctgagatcgggaatccaagagcaagatagatagttgtcactcatcctaaaattttgaaatgtatgttttat 4862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 16115308 - 16115220
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttccaccataaa 16115220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 42028843 - 42028754
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||    
T  42028843 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 42028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 31860079 - 31860167
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttccaccataaa 31860167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 42028576 - 42028655
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  42028576 atgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgtttt 42028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 7317635 - 7317723
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||| ||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttccaccataaa 7317723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 2059490 - 2059571
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttcca 421  Q
    |||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttcca 2059571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 15332926 - 15332849
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 3671822 - 3671899
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcattttttttc 3671899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 16115045 - 16115123
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||| || |||||||    
T  16115045 tgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 16115123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 31470586 - 31470663
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31470586 tgagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 13280099 - 13280022
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || |||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13280022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 31860349 - 31860272
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgtttt 31860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 31470841 - 31470763
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||| ||||| ||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacacatcattttttttc 31470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 7317899 - 7317833
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 36059351 - 36059285
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 36059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 2059748 - 2059671
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||| || |||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 2059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 13279839 - 13279901
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 401  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  13279839 tgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 38085967 - 38086032
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacac 38086032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaa 397  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| || || ||||||||| | ||  ||||||| ||||||| |||||||||||| || |||| ||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 11894 - 11803
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11894 tatgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaa 11803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 11625 - 11703
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  11625 tgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgtttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 42630711 - 42630799
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||| ||||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttccaccataaa 42630799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 26534506 - 26534591
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| || |||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 26534591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 130254 - 130342
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaa 130342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 33377914 - 33377835
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  33377914 atgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 8323706 - 8323792
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||| || |||||||||||||||    
T  8323706 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccat 8323792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 791592 - 791669
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 26534762 - 26534685
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 35454710 - 35454637
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 5146767 - 5146690
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 19899021 - 19898941
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||  ||||||||||    
T  19899021 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 35454450 - 35454529
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  35454450 tgagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttttc 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 6518201 - 6518264
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 401  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  6518201 atgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 8323970 - 8323895
Alignment:
Q  342 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || |||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 8323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 8489123 - 8489200
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||||||||||| || | ||| |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||  ||| ||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 14388584 - 14388512
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 412  Q
    ||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  14388584 tgagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 19897228 - 19897295
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 411  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 5146504 - 5146582
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| | ||| ||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgttattttttttc 5146582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 40881791 - 40881867
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| ||||||||||||||||| |||  || |||||||||||||| ||||||||||||||||| ||||||||||    
T  40881791 tgagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 130513 - 130435
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||| |||| || |||||||    
T  130513 tgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgtttt 130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 14069861 - 14069926
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 228717 - 228794
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||  |||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| | ||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgtttt 228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 791868 - 791810
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaa 397  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  791868 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 42630968 - 42630894
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||| ||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||| || |||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgtttt 42630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 6518466 - 6518390
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||| |||| || ||||| ||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgatacatcattttttt 6518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 401  Q
    |||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 40882066 - 40882006
Alignment:
Q  357 gaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||| | ||| |||||||||||||||||||||||||||| ||||||| | ||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgtttt 40882006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 13823150 - 13823215
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| || ||||||||| || |||||| ||| |||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacac 13823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 27319700 - 27319654
Alignment:
Q  371 tatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||    
T  27319700 tatcattcttacaaacaacaaattaaaatatgaaacatcattgtttt 27319654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 791811 - 791770
Alignment:
Q  387 aacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  791811 aacaaattaaaacatgacacgtcattatttttccaccataaa 791770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 27319482 - 27319541
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatga 403  Q
    |||||||||||||| || ||||  ||| ||||||||||||||| || ||||||||||||||    
T  27319482 aaatttttgtgtagtaatgaacttaac-tatcattcttacaaataataaattaaaacatga 27319541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 10227976 - 10227888
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttttccaccataaa 10227888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 50892960 - 50893040
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  50892960 tatgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 19059378 - 19059456
Alignment:
Q  344 aatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccac 422  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccac 19059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 28217783 - 28217706
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgtttt 28217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 10227710 - 10227789
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||||    
T  10227710 atgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 10227789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 48871502 - 48871424
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||  ||| ||||||||||    
T  48871502 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgtttt 48871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 23346419 - 23346496
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattttttt 23346496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 50893226 - 50893148
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    |||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatcattttttttc 50893148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 7062260 - 7062183
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 26552257 - 26552179
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||| || |||||||    
T  26552257 tgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 26552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 48871247 - 48871324
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatcatttttttt 48871324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 412  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 425
Target Start/End: Original strand, 26551992 - 26552075
Alignment:
Q  342 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||| ||||||||||||||| | |||||||||| ||||||||||| ||||||||| ||| ||| || |||||||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccat 26552075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 28217530 - 28217607
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||  |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 39669321 - 39669245
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||| |||||||| |||||||  ||| ||||||||||||||| |||||||||||||||||||| | ||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgtttt 39669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 42180570 - 42180641
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 411  Q
    ||||||||| ||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||| ||||    
T  42180570 tgagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 4156891 - 4156969
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||| || ||||||||||||||||| ||||| |||||    
T  4156891 tgagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 50905175 - 50905104
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 412  Q
    |||||||||||||||  |||||| | ||| ||||||||||||||||||||||||||||||||| || |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtcatt 50905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 7062038 - 7062084
Alignment:
Q  371 tatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 19059634 - 19059565
Alignment:
Q  348 tttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||| |||||||||| |||| ||| |||||||||||| ||||||| || |||||||    
T  19059634 tttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgtttt 19059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 23346675 - 23346607
Alignment:
Q  349 ttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||  ||||| |||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 41834141 - 41834069
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 411  Q
    |||||||||| ||||||||||||||||  ||| || |||| |||||||||||||||||||||||||||| ||||    
T  41834141 atgagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 41833872 - 41833951
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||| |||| ||| |||||| | ||  ||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  41833872 atgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattatttt 41833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 50904992 - 50905070
Alignment:
Q  341 agaaatttttgtgtaggaacgaaccca--acctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||| ||||||||||||||||| |  |  ||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgtttt 50905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 42180805 - 42180759
Alignment:
Q  371 tatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattatttt 42180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 39669086 - 39669135
Alignment:
Q  370 ctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    ||||||||||||||||||| ||||||||| |||| || ||||| ||||||    
T  39669086 ctatcattcttacaaacaataaattaaaatatgatacgtcattttttttc 39669135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 33022164 - 33022249
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 33022249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 33022431 - 33022355
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || |||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 21389282 - 21389208
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 7789678 - 7789744
Alignment:
Q  351 gtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 29859813 - 29859735
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttc 419  Q
    |||||||||| |||||||||||||| ||  ||||||| ||| ||||||||||||||| ||| |||| | ||| ||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttc 29859735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 28472624 - 28472559
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||||| |||||||||||||| ||  ||||||| ||| ||||||||||||||| ||| ||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacac 28472559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 40533963 - 40534048
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccat 40534048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 3102540 - 3102628
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 3102628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 428
Target Start/End: Original strand, 13690216 - 13690303
Alignment:
Q  341 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 13690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 9231577 - 9231665
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  9231577 tatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 9231665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 3102805 - 3102726
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  3102805 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 40534227 - 40534150
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 18381573 - 18381496
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||| ||||||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 411
Target Start/End: Complemental strand, 5121071 - 5121000
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 411  Q
    |||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 11147014 - 11147080
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 18936941 - 18936864
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||| |||||||||||| ||  |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 37177890 - 37177813
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||| |||||||||||  ||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 18936676 - 18936752
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  359 acgaacccaacctatcattcttacaaacaacaaattaaaacatg 402  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 37177624 - 37177688
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgaca 405  Q
    |||||||| || ||||||||||||  |||  |||||||||||||||||| ||||||||| ||||||    
T  37177624 gagaaattcttctgtaggaacgaattcaat-tatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 428
Target Start/End: Original strand, 33219071 - 33219160
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccataaa 428  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  33219071 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttccaccataaa 33219160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 33214703 - 33214618
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| || |||||||||||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 33214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 36635505 - 36635425
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  36635505 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 342 - 425
Target Start/End: Original strand, 10598810 - 10598893
Alignment:
Q  342 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| || |||||||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 10598893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 27073173 - 27073095
Alignment:
Q  339 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  27073173 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 27073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 33214443 - 33214520
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 19580574 - 19580497
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 36274389 - 36274304
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    |||||||| || |||||||||||| | ||||||||||  |||||||||||||||||||||||||||| || |||||||||||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 36274304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 36274126 - 36274196
Alignment:
Q  347 ttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || |||||||    
T  36274126 ttttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274196  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 401  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 36635241 - 36635303
Alignment:
Q  343 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacac 36635303  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 11650997 - 11651077
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||| |||| || ||||||||| ||| ||||||||||||||||||||| |||||| |||| |  ||||||||||    
T  11650997 tatgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgtttt 11651077  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatg 402  Q
    |||||||| |||||| | |||||||| ||| |||||| |||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 2814510 - 2814430
Alignment:
Q  338 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2814510 atgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 37994705 - 37994793
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| || || |||||||||||||||    
T  37994705 tatgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccat 37994793  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 14193591 - 14193512
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14193591 tatgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 397269 - 397192
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 37994972 - 37994895
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| || |||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgtttt 37994895  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 41539770 - 41539847
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| || |||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgtttt 41539847  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 44036814 - 44036899
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||  |||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccat 44036899  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 41540034 - 41539969
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 41539969  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 14193324 - 14193400
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttt 417  Q
    ||||||||||||| |||||||||||| ||| ||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgtttt 14193400  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 2814243 - 2814308
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacac 2814308  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 397004 - 397072
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    ||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| |||||||||||| ||||    
T  397004 tatgagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacac 397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 25101746 - 25101796
Alignment:
Q  356 ggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacac 25101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 40588057 - 40587976
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttttt 418  Q
    ||||||||||| | |||||||||||||   ||  ||||||| ||| ||| ||||||||||||||||| | |||||| |||||    
T  40588057 tatgagaaattctggtgtaggaacgaatttaatatatcatttttataaataacaaattaaaacatgatatttcatttttttt 40587976  T

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Target: scaffold0135 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 37443 - 37531
Alignment:
Q  337 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgtttttccaccat 425  Q
    ||||||||||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  37443 tatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 37531  T

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Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  359 acgaacccaacctatcattcttacaaacaacaaattaaaacatg 402  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 15847 - 15913
Alignment:
Q  340 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 406  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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