View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_64 (Length: 448)
Name: NF20384_low_64
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 37497398 - 37497818
Alignment:
| Q |
8 |
ggtgttttacttatctgggttgtgttcatttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgtactcttggttatatacactg |
107 |
Q |
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| T |
37497398 |
ggtgttttacttatctgggttgtgttcatttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgtactcttggttatatacactg |
37497497 |
T |
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| Q |
108 |
gctcagtctgnnnnnnncttggtctttgagtatgttagatccactgaaagaggcaagtatctgcattctacaatactactttatcaatgaactttgattt |
207 |
Q |
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| T |
37497498 |
gctcagtctgaaaaaaacttggtctttgagtatgttagatccactgaaagaggcaattatctgcattctacaatactactttatcaatgaactttgattt |
37497597 |
T |
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| Q |
208 |
tataattatcattctttaatttttacaccctctccctacacccaataaaaataactccnnnnnnncaattgtatactgaaattaaattatggacaaaaaa |
307 |
Q |
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| T |
37497598 |
tataattatcattctttaatttt-------------tacacccaataaagataacttctttttttcaattgtatactgaaattaaattatggacaaaaaa |
37497684 |
T |
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| Q |
308 |
tgtgtcttgaatgcatgttttttgtgcctcttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatttggagggagaaaattgatac |
407 |
Q |
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| T |
37497685 |
tgtgtcttgaatgcatgttttttgtgccgcttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatttggagggagaaaattgatac |
37497784 |
T |
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| Q |
408 |
tagggctcaactaagattttcattgtggtctctg |
441 |
Q |
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| T |
37497785 |
tagggctcaactaagattttcattgtggtttctg |
37497818 |
T |
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