View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_68 (Length: 439)
Name: NF20384_low_68
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 146 - 429
Target Start/End: Original strand, 7227223 - 7227506
Alignment:
| Q |
146 |
gcattaaacaaattaattagtttggtccttgaaagttgtattgttcgtgatgaacaaaaactttccatatcaagtgccacactcacctatttaacaatac |
245 |
Q |
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| T |
7227223 |
gcattaaacaaattaattagtttggtccttgaaagttgtattgttagtaatgaacaaaaactttccatatcaagtgccacactcacctatttaacaatac |
7227322 |
T |
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| Q |
246 |
taaatctttgggttggtttcaaatttgaattatccactccaagtctttctaattttgttgtttattgtggtgctcctcttcagaaattgtgtgggagcac |
345 |
Q |
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| T |
7227323 |
taaatctttgtgttggtttcaaatttgaattatccactccaagtctttctaattttgttgtttattgtggtgcttctcttcagaaattgtgtgggagcac |
7227422 |
T |
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| Q |
346 |
gtgcaatctcccttccattaaacatgtaaatatcatcattcatggaagaagggagctgaattcggcggatactcctttgcttct |
429 |
Q |
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| T |
7227423 |
gtgcaatctcccttccatcaaacatgtaaatatcatcattcatggaagaagggagctgaatttggcggatactcctttggttct |
7227506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 7222447 - 7222578
Alignment:
| Q |
19 |
tcttgaactttctcttgggacaggggcattatttcctaattctcttaattttccagcaattacagacctgtcacttcacaagtttaccttctgtgttagc |
118 |
Q |
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| T |
7222447 |
tcttcaactttctcctggaacgggggcattatttcctaattctcttaattttccagcaattacagacctgtaacttcacaagtttaccttctgtgttagc |
7222546 |
T |
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| Q |
119 |
aatgatggttgtgccaaccccttttcggcatt |
150 |
Q |
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| T |
7222547 |
aacgatggttgtgccaaccccttttcggcatt |
7222578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 7058436 - 7058328
Alignment:
| Q |
120 |
atgatggttgtgccaaccccttttcggcattaaacaaattaattagtttggtccttgaaagttgtattgttcgtgatgaacaaaaactttccatatcaag |
219 |
Q |
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| T |
7058436 |
atgatggtcgtgccaatcccttttcgacattaaacaagttgaatagtttgatcattaacagatgtgcagttcgtgataaacaaaacctctacatatcgag |
7058337 |
T |
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| Q |
220 |
tgccacact |
228 |
Q |
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| T |
7058336 |
tgccacact |
7058328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 7140282 - 7140236
Alignment:
| Q |
198 |
aacaaaaactttccatatcaagtgccacactcacctatttaacaata |
244 |
Q |
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||||||| |||| ||||||||||||||| |||||| ||||||||||| |
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| T |
7140282 |
aacaaaacctttgcatatcaagtgccacgctcaccaatttaacaata |
7140236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 8656197 - 8656151
Alignment:
| Q |
198 |
aacaaaaactttccatatcaagtgccacactcacctatttaacaata |
244 |
Q |
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||||||| || | |||||||||||||||||||||| ||||||||||| |
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| T |
8656197 |
aacaaaacctctgcatatcaagtgccacactcaccaatttaacaata |
8656151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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