View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_69 (Length: 437)
Name: NF20384_low_69
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 374151 - 373743
Alignment:
| Q |
18 |
aagagctcccatttgattgtgggaagacactcatgaagtaaatcccccatgtatcaaataactcttacttcaaggatgtctttctgttgtatttcttgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374151 |
aagagctcccatttgattgtgggaagacactcatgaagtaaatcccccatgtatcaaataactcttacttcaaggatgtctttctgttgtatttcttgta |
374052 |
T |
|
| Q |
118 |
tgcttgatatcatagtcacataattcggaactcgttttggtacatgatataggtacgggttcgcggtatgtgacatgagaaaaattcagtacataccggg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374051 |
tgcttgatatcatagtcacataattcggaacttgttttggtacatgatataggtacgggttcgcggtatgtgacatgagaaaaattcagtacataccggg |
373952 |
T |
|
| Q |
218 |
gtatggagcttcggtacacgtctgttcgtaatagcttacactatactcaattggtactactactaagaaccgacttgccgaattttcttatgtcgcgaac |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
373951 |
gtatggagcttcggtgcacgtctgttcgtaatagcttacactatactcaattggtactactactaagaactgacttgccaaattttcttatgtcgcgaac |
373852 |
T |
|
| Q |
318 |
ccgtacccgtaccacataccaaagcgaattacgaattatgtgactatgcttcatcccaataatacgttttagtgttgttgaagtagtttctcttttgctg |
417 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
373851 |
ccgtaccagtaccacataccaaagcgaattacgaatcatgtgactatggttcatcccaataatacgttttagtgttgttgaagtagtttctcttttgctg |
373752 |
T |
|
| Q |
418 |
ataattcat |
426 |
Q |
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||||||||| |
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| T |
373751 |
ataattcat |
373743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 27811388 - 27811430
Alignment:
| Q |
316 |
acccgtacccgtaccacataccaaagcgaattacgaattatgt |
358 |
Q |
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| T |
27811388 |
acccgaacccgtaccacgtaccaaagcgaattacgaattatgt |
27811430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 28043481 - 28043544
Alignment:
| Q |
307 |
atgtcgcgaacccgtacccgtaccacataccaaagcgaattacgaattatgtgactatgcttca |
370 |
Q |
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|||||||| ||||||||||||||| | |||||| ||||||| || |||||||||||||| |||| |
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| T |
28043481 |
atgtcgcgtacccgtacccgtaccgcgtaccaacgcgaattgcgtattatgtgactatggttca |
28043544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 26637509 - 26637469
Alignment:
| Q |
325 |
cgtaccacataccaaagcgaattacgaattatgtgactatg |
365 |
Q |
| |
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|||||| | |||||| ||||||||||||||||||||||||| |
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| T |
26637509 |
cgtaccgcgtaccaacgcgaattacgaattatgtgactatg |
26637469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 36440801 - 36440877
Alignment:
| Q |
128 |
catagtcacataattcggaactcgttttggtacatgatataggtacgggttcgcggtatgtgacatgagaaaaattc |
204 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| | ||| |||| |||||||||||| | ||||| ||||||||| |
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| T |
36440801 |
catagtcacataattcgtaattcgtgttggtacacggtatgggtatgggttcgcggtacgcgacatttgaaaaattc |
36440877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 14518951 - 14518908
Alignment:
| Q |
322 |
acccgtaccacataccaaagcgaattacgaattatgtgactatg |
365 |
Q |
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||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
14518951 |
acccgtaccacataccaaaacgtattacgaattatgcgactatg |
14518908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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