View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_70 (Length: 436)
Name: NF20384_low_70
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 48156052 - 48155659
Alignment:
| Q |
16 |
atgttggtaacaacatttatgattgctgtttttatttactaaaaatgcttatagcaattcatttatgttggatacatgtcagaatattaattcataattg |
115 |
Q |
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| T |
48156052 |
atgttggtaacaacatttatgattgctgtttttatttactaaaaatgcttatagcaattcatttatgttggatacatgtcagaatattaattcataattg |
48155953 |
T |
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| Q |
116 |
gaaactagctatgggctatggctacctatgcaacatgcaagaatgtgagtttgttcatttgtttgtctcctaacaaattcaacatgagattttttaaaat |
215 |
Q |
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| T |
48155952 |
gaaactagctatgg-------ctacctatgcaacatgcaagaatgtgagtttgttcatttgtttgtctcctaacaaattcaacatgagattttttaaaat |
48155860 |
T |
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| Q |
216 |
aagtaaaaaa-ttaaaatctgcagttactaataatattgccaaattcggtgatataaatttcgttgcaatgaagacaacaacacttttgaaaaccatctg |
314 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48155859 |
aagtaaaaaaattaaaatctgcagttactaataatattgccaaattcggtgttataaattttgttgcaatgaagacaacaacacttttgaaaaccatctg |
48155760 |
T |
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| Q |
315 |
aaaatccaccgaaccaagttgcagatcgaaaatccatcgcatagcctgaaaaaaggccagtagcttctctgacattcgatcttgacaaatgcaaaatgac |
414 |
Q |
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| T |
48155759 |
aaaatccactgaaccaagttgcagatcgaaaatccatcgcatagcctgaaaaaaggccagtagcttctctgacattcgatcttgacaaatgtaaaatgac |
48155660 |
T |
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