View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_71 (Length: 436)
Name: NF20384_low_71
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 1458330 - 1458189
Alignment:
| Q |
280 |
gtggaagcctttgagggtcacagaaaacatttttctcggaaggcacattgtgattcattaacctttgatctattggtttccgtatataatcgcatcattc |
379 |
Q |
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| T |
1458330 |
gtggaagcctttgagggtcacagaaaacatttttctcggaaggcacattgtgattcattaacctttgatctaatggtttccgtatataatcgcatcattc |
1458231 |
T |
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| Q |
380 |
accttttcaaatcatttgtaactattatgttagagttattat |
421 |
Q |
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| T |
1458230 |
accttttcaaatcatttgtaactattatgttacagttattat |
1458189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 1459015 - 1458856
Alignment:
| Q |
10 |
attattctcaagttcaagggcgtctgcaacatgtaaactctcggtttattcggaacaatatgattaagtaagcaagtagtagtttctctatt--ctctat |
107 |
Q |
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| T |
1459015 |
attattctcaagttcaagggtgtctgcaacatgtaaactctcggtttatttggaacaatattattaagtaagcaagtagtagtttctctattctctctgt |
1458916 |
T |
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| Q |
108 |
tgtttcattaattttatatttgaattactagacaccaagcaagcactttaatcattagtg |
167 |
Q |
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| T |
1458915 |
tgtttcattaattttatatttgaattactagacacaaagcaagcactttaatcattagtg |
1458856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 1443391 - 1443427
Alignment:
| Q |
279 |
agtggaagcctttgagggtcacagaaaacatttttct |
315 |
Q |
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| T |
1443391 |
agtggaagcctttgagggtcacaaaacacatttttct |
1443427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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