View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_74 (Length: 433)

Name: NF20384_low_74
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_74
NF20384_low_74
[»] chr5 (9 HSPs)
chr5 (20-295)||(5771945-5772222)
chr5 (339-414)||(10116626-10116701)
chr5 (339-408)||(33819237-33819306)
chr5 (347-415)||(31657738-31657806)
chr5 (343-384)||(10620769-10620810)
chr5 (339-420)||(30117159-30117240)
chr5 (347-412)||(34332272-34332337)
chr5 (347-383)||(9978037-9978073)
chr5 (342-414)||(37700142-37700214)
[»] chr1 (9 HSPs)
chr1 (339-421)||(1427245-1427327)
chr1 (339-421)||(33336847-33336929)
chr1 (347-415)||(38505853-38505921)
chr1 (347-415)||(52428942-52429010)
chr1 (339-414)||(50074456-50074531)
chr1 (347-384)||(27975102-27975139)
chr1 (339-412)||(35693108-35693181)
chr1 (339-384)||(50225364-50225409)
chr1 (347-415)||(19349261-19349329)
[»] chr6 (14 HSPs)
chr6 (292-421)||(23282715-23282842)
chr6 (289-421)||(7847222-7847348)
chr6 (344-421)||(493589-493666)
chr6 (347-414)||(8646121-8646188)
chr6 (347-421)||(23923546-23923620)
chr6 (347-415)||(8217634-8217702)
chr6 (347-415)||(22998960-22999028)
chr6 (347-415)||(23789376-23789444)
chr6 (339-384)||(5575421-5575466)
chr6 (339-384)||(8345286-8345331)
chr6 (229-278)||(30645558-30645606)
chr6 (359-415)||(4175308-4175364)
chr6 (347-415)||(11161905-11161973)
chr6 (347-415)||(22710320-22710388)
[»] chr3 (14 HSPs)
chr3 (292-421)||(8503414-8503542)
chr3 (348-421)||(49544088-49544161)
chr3 (289-415)||(48904178-48904303)
chr3 (339-414)||(16776803-16776878)
chr3 (339-414)||(29383060-29383135)
chr3 (339-414)||(35938411-35938482)
chr3 (347-384)||(26593711-26593748)
chr3 (289-415)||(48902623-48902748)
chr3 (339-415)||(1111563-1111639)
chr3 (347-415)||(12918753-12918821)
chr3 (347-415)||(17589791-17589859)
chr3 (339-415)||(27646221-27646297)
chr3 (339-415)||(34021910-34021986)
chr3 (339-415)||(42755387-42755463)
[»] chr7 (9 HSPs)
chr7 (339-421)||(46148477-46148559)
chr7 (342-414)||(18312238-18312310)
chr7 (347-415)||(24504738-24504806)
chr7 (347-415)||(30534759-30534827)
chr7 (347-412)||(26736534-26736599)
chr7 (347-384)||(39197772-39197809)
chr7 (347-415)||(32964310-32964378)
chr7 (347-415)||(37915197-37915265)
chr7 (347-383)||(42538570-42538606)
[»] chr2 (9 HSPs)
chr2 (342-421)||(13598569-13598645)
chr2 (339-414)||(12969557-12969632)
chr2 (364-414)||(14493729-14493779)
chr2 (347-415)||(41422566-41422634)
chr2 (347-415)||(41494537-41494605)
chr2 (339-414)||(12296345-12296420)
chr2 (347-415)||(9701124-9701192)
chr2 (347-415)||(28566205-28566273)
chr2 (347-415)||(30857992-30858060)
[»] chr8 (9 HSPs)
chr8 (347-421)||(5244536-5244610)
chr8 (347-384)||(13335842-13335879)
chr8 (342-414)||(30512816-30512889)
chr8 (342-414)||(24260870-24260942)
chr8 (347-415)||(41898411-41898479)
chr8 (339-414)||(2786163-2786238)
chr8 (347-415)||(19176190-19176258)
chr8 (339-415)||(23497774-23497850)
chr8 (344-384)||(38183512-38183552)
[»] chr4 (10 HSPs)
chr4 (347-418)||(35909695-35909766)
chr4 (340-414)||(8418262-8418336)
chr4 (347-421)||(38613461-38613535)
chr4 (339-384)||(17261391-17261436)
chr4 (347-415)||(13498401-13498469)
chr4 (347-414)||(13138780-13138847)
chr4 (347-384)||(25474870-25474907)
chr4 (347-384)||(50424800-50424837)
chr4 (347-415)||(6629388-6629456)
chr4 (347-415)||(39797488-39797556)
[»] scaffold0236 (1 HSPs)
scaffold0236 (347-415)||(17518-17586)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 5771945 - 5772222
Alignment:
Q  20 ttctgcatttacaagaacgagattgagactgtattttcatttaatacttattatggtttctatattgttttgaattaagctcaagttttatttttgacta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5771945 ttctgcatttacaagaacgagattgagactgtattttcatttaatacttattatggtttctatattgttttgaattaagctcaagttttatttttgacta 5772044  T
Q  120 aatatacatgttttttccttt--aatgaatttaggtgaatctttttggtggtcatagatactgttgttatgcatgtcaagctagaaaattagcacgatct 217  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5772045 aatatacatgttttttcctttttaatgaatttaggtgaatctttttggtggtcatagatactgttgttatgcatgtcaagctagaaaattagcacgacct 5772144  T
Q  218 tgatttgccttaattaattaaatagtatttttcttgtgaaatgaaagacatgttgctagatggactatagttaatact 295  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5772145 tgatttgccttaattaattaaataatatttttcttgtgaaatgaaagacatgttgctagatggactatagttaatact 5772222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 10116626 - 10116701
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| |||||||| ||||||| ||||| ||||| |||||||||||| || |||||||||||  ||||||||||    
T  10116626 gtctctttttataagattcttttggtatttccaaatacattaattaattctttaccatcataccattatttatttt 10116701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 33819306 - 33819237
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatt 408  Q
    ||||||| |||||||| || |||| ||||| ||||| ||||||||||||||| |||| |||| |||||||    
T  33819306 gtctctttttataagattcatttgatatttccaaatacattaattaattttttaccaacatatccctatt 33819237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 31657738 - 31657806
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  31657738 ttataagactcttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 31657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 10620769 - 10620810
Alignment:
Q  343 cttattataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||| ||||| |||||| ||||||||||||||    
T  10620769 cttattataagacttttttgatatttttaaatgcattaatta 10620810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 30117159 - 30117240
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatat 420  Q
    ||||||| ||||||||||| |||| |||||  || | |||||||||||| || |||| || ||| ||||||||||| |||||    
T  30117159 gtctctttttataagactcctttgatatttgtaagtacattaattaattctttaccaacaaacctctatttattttatatat 30117240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 34332272 - 34332337
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatt 412  Q
    ||||||||||| |||||||||| ||| | ||||||||| ||||| ||   ||||||||||||||||    
T  34332272 ttataagactcatttgttatttccaactacattaattatttttttacatacatacccctatttatt 34332337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 9978037 - 9978073
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatt 383  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  9978037 ttataagacccttttgatattttcaaatgcattaatt 9978073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 37700142 - 37700214
Alignment:
Q  342 tcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    |||| ||||||||||| |||| ||||| | | | |||||||||||| || |||| |||| |||||||||||||    
T  37700142 tctttttataagactcctttgatatttccgagtacattaattaattctttaccaacatatccctatttatttt 37700214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 1427245 - 1427327
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1427245 gtctcttattataagacccctttgttatttccaagtgcattaattaatttttcaccatcatacccctatttattttgtatatt 1427327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 33336847 - 33336929
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||||||||||||   |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336847 gtctcttattataagacctctttgttatttccaagtgcattaattaatttttcaccatcatacccctatttattttgtatatt 33336929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 38505853 - 38505921
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| ||||| ||||| ||||||||| || || |||| ||||||| |||||||||||    
T  38505853 ttataagactcctttgatatttccaaatacattaattatttctttaccaacatacccttatttattttg 38505921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 52428942 - 52429010
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| |||||||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  52428942 ttataaggctcttttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 52429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 50074456 - 50074531
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| ||||||||||  |||| ||||| ||| | |||||||||||| || |||| ||||| ||||||||||||    
T  50074456 gtctctttttataagacttctttggtatttccaagtacattaattaattctttaccaacatactcctatttatttt 50074531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 27975139 - 27975102
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  27975139 ttataaaactcttttgttattttcaactgcattaatta 27975102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 35693108 - 35693181
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatt 412  Q
    ||||||| ||||||||  | |||| |||||||||   ||||||||||||||| |||| |||||||||| |||||    
T  35693108 gtctctttttataagatccctttgatattttcaagcacattaattaattttttaccaacatacccctagttatt 35693181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 50225409 - 50225364
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaatta 384  Q
    ||||||| |||||||||||| ||| ||||||||| |||||||||||    
T  50225409 gtctctttttataagactctattgatattttcaagtgcattaatta 50225364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 19349261 - 19349329
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| | |||| ||||| ||| | ||||||||| ||||| |||| ||||||| |||||||||||    
T  19349261 ttataagacccatttggtatttccaagtacattaattatttttttaccaacatacccttatttattttg 19349329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 23282842 - 23282715
Alignment:
Q  292 tactacctccctccctaaatataatacccttttacgaatannnnnnngtctcttattataagactcttttgttattttcaaatgcattaattaatttttc 391  Q
    |||||||||| ||||||||||||| ||||||||  ||||        ||||||||||||||||| | |||||||||| ||| ||||||||||||||||||    
T  23282842 tactacctccgtccctaaatataagacccttttgagaat--ttttttgtctcttattataagacccctttgttatttccaagtgcattaattaatttttc 23282745  T
Q  392 accatcatacccctatttattttgtatatt 421  Q
    ||||||||||||||||||||||||| ||||    
T  23282744 accatcatacccctatttattttgtttatt 23282715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 7847348 - 7847222
Alignment:
Q  289 taatactacctccctccctaaatataatacccttttacgaatannnnnnngtctcttattataagactcttttgttattttcaaatgcattaattaattt 388  Q
    ||||||||||||| ||||||||||||| ||||||||  ||||        |||||||||||||| || | |||||||||| ||| ||||||||||    |    
T  7847348 taatactacctccgtccctaaatataagacccttttgagaat--ttttttgtctcttattataatacccctttgttatttccaagtgcattaatt----t 7847255  T
Q  389 ttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||||||||||||||||||||||||||||    
T  7847254 ttcaccatcatacccctatttattttgtatatt 7847222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 493666 - 493589
Alignment:
Q  344 ttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||| ||||||| | ||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  493666 ttataataagacccctttgttacttccaagtgcattaattaatttttcaccatcatacccctgtttattttgtatatt 493589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 8646188 - 8646121
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||||||| |||| ||||| ||| | ||||||||||||||| |||| ||||||||||||||||||    
T  8646188 ttataagactcatttgctatttccaagtacattaattaattttttaccaccatacccctatttatttt 8646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 23923546 - 23923620
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||||||||||| ||||||||| | |||||| || || || |||| ||||||||||||||||||| |||||    
T  23923546 ttataagactcttttggtattttcaattacattaaatatttctttaccaccatacccctatttattttgcatatt 23923620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 8217702 - 8217634
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||||||| | ||||||||| || || |||| |||| || |||||||||||    
T  8217702 ttataagactcttttggtattttcaagtacattaattatttctttaccaacatatccttatttattttg 8217634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 22999028 - 22998960
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  22999028 ttataagactcttttggtatttccaagtacattaattatttatttaccaacatacccttatttattttg 22998960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 23789376 - 23789444
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  23789376 ttataagactcttttggtatttccaagtacattaattatttatttaccaacatacccttatttattttg 23789444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 5575421 - 5575466
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaatta 384  Q
    ||||||| |||||||||| ||||| ||||||||| |||||||||||    
T  5575421 gtctctttttataagacttttttgatattttcaagtgcattaatta 5575466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 8345286 - 8345331
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaatta 384  Q
    ||||||||||||||||||  |||| ||||||||||| |||||||||    
T  8345286 gtctcttattataagactaatttgatattttcaaatacattaatta 8345331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 30645558 - 30645606
Alignment:
Q  229 aattaattaaatagtatttttcttgtgaaatgaaagacatgttgctagat 278  Q
    ||||||||||||| || |||||||||||||||| || |||||||||||||    
T  30645558 aattaattaaatattagttttcttgtgaaatgagag-catgttgctagat 30645606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 4175308 - 4175364
Alignment:
Q  359 tttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||| ||||| ||||| ||||||||| ||||| |||| ||||||| |||||||||||    
T  4175308 tttgatatttccaaatacattaattatttttttaccaacatacccttatttattttg 4175364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 11161905 - 11161973
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | |||||||||||| || |||| | ||||| |||||||||||    
T  11161905 ttataagacccttttggtatttacaagtacattaattaattctttaccaacgtacccttatttattttg 11161973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 22710320 - 22710388
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||||||| | ||||||||| || || ||||  |||||| |||||||||||    
T  22710320 ttataagacccttttggtattttcaagtacattaattatttctttaccaaaatacccttatttattttg 22710388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 8503542 - 8503414
Alignment:
Q  292 tactacctccctccctaaatataatacccttttacgaatannnnnnngtctcttattataagactcttttgttattttcaaatgcattaattaatttttc 391  Q
    |||||||||| ||||||||||||| ||||||||  ||||        ||||||||||||||||||  |||||||||| |||  |||||||||||||||||    
T  8503542 tactacctccgtccctaaatataagacccttttgagaat-tttttttgtctcttattataagacttctttgttatttccaagcgcattaattaatttttc 8503444  T
Q  392 accatcatacccctatttattttgtatatt 421  Q
    ||||||||||||||||||||||||||||||    
T  8503443 accatcatacccctatttattttgtatatt 8503414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 49544161 - 49544088
Alignment:
Q  348 tataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49544161 tataagacccctttgttattttcaagtgcattaattaatttttcaccatcatacccctatttattttgtatatt 49544088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 48904303 - 48904178
Alignment:
Q  289 taatactacctccctccctaaatataatacccttttacgaatannnnnnngtctcttattataagactcttttgttattttcaaatgcattaattaattt 388  Q
    ||||||||||||| ||||||| ||||| |||||||||  || |       ||| ||| |||||||||||||||| ||||| ||| | ||||||||| ||     
T  48904303 taatactacctccgtccctaattataagacccttttaaaaa-aataatttgtccctttttataagactcttttggtatttccaagtacattaattatttc 48904205  T
Q  389 ttcaccatcatacccctatttattttg 415  Q
    || |||| ||||||| |||||||||||    
T  48904204 tttaccaacatacccttatttattttg 48904178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 16776878 - 16776803
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| ||||||||| | |||| ||||| ||| | |||||||||||| || ||||  |||||||||||||||||    
T  16776878 gtctctttttataagacccctttgctatttccaagtacattaattaattctttaccaatatacccctatttatttt 16776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 29383060 - 29383135
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| ||||||||  | |||| ||||||||| | |||||||||||| || |||| ||||||| ||||||||||    
T  29383060 gtctctttttataagatccctttgatattttcaagtacattaattaattctttaccaacatacccttatttatttt 29383135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 35938411 - 35938482
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| |||||||| ||||||| ||||||||||| |||||||||    || |||| || |||||||||||||||    
T  35938411 gtctctttttataagattcttttgatattttcaaatacattaatta----tttaccaacacacccctatttatttt 35938482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 26593748 - 26593711
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||||||||||||||| | |||||||||    
T  26593748 ttataagactcttttgttattttcaactacattaatta 26593711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 48902748 - 48902623
Alignment:
Q  289 taatactacctccctccctaaatataatacccttttacgaatannnnnnngtctcttattataagactcttttgttattttcaaatgcattaattaattt 388  Q
    ||||||||||||| ||||||| ||||| ||||| |||  ||||       ||| ||| ||||||||| |||||| ||||| ||| | ||||||||| |||    
T  48902748 taatactacctccgtccctaattataagaccctcttaa-aataataatctgtccctttttataagacccttttggtatttccaagtacattaattatttt 48902650  T
Q  389 ttcaccatcatacccctatttattttg 415  Q
    || |||| ||||||  |||||||||||    
T  48902649 tttaccaacatacctttatttattttg 48902623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 1111639 - 1111563
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| ||||||||| |||||| ||||| ||| | ||||||||| || || ||||  |||||| |||||||||||    
T  1111639 gtctctttttataagacccttttggtatttccaagtacattaattatttctttaccaagatacccttatttattttg 1111563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 12918821 - 12918753
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||  |||||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  12918821 ttataagatccttttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 12918753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 17589859 - 17589791
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| ||||||||| | ||||||||| || || |||| || |||| |||||||||||    
T  17589859 ttataagactcatttggtattttcaagtacattaattatttctttaccaacacacccttatttattttg 17589791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 27646297 - 27646221
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| ||||||||| |||||| ||||||||| | ||||||||| || || || |  |||||| |||||||||||    
T  27646297 gtctctttttataagacccttttggtattttcaagtacattaattatttctttactaagatacccttatttattttg 27646221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 34021986 - 34021910
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| ||||||||||| |||| ||||||||| | ||| ||||| || || || | ||||||| |||||||||||    
T  34021986 gtctctttttataagactcctttggtattttcaagtacatcaattatttctttactaacatacccttatttattttg 34021910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 42755387 - 42755463
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| |||||||||  ||||| ||||| ||||| ||||||||| || || |||| ||||||  |||||||||||    
T  42755387 gtctctttttataagacctttttggtatttccaaatacattaattatttctttaccaacatacctttatttattttg 42755463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 46148477 - 46148559
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46148477 gtctcttattataagacccctttgttatttccaagtgcattaattaatttttcatcatcatacccctatttattttgtatatt 46148559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 18312238 - 18312310
Alignment:
Q  342 tcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    |||| ||||||||  |||||| ||||||||||| ||||||||||||||| |||| ||||   |||||||||||    
T  18312238 tctttttataagatacttttgatattttcaaatacattaattaattttttaccaacatatttctatttatttt 18312310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 24504738 - 24504806
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  24504738 ttataagactcttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 24504806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 30534759 - 30534827
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  30534759 ttataagactcctttgatattttcaagtacattaattatttctttaccaacatacccttatttattttg 30534827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 26736534 - 26736599
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatt 412  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||| ||   ||| ||||||||||||    
T  26736534 ttataagactcatttgttattttcaactacattaattatttttttacatacatgcccctatttatt 26736599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 39197772 - 39197809
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||||||||||||||| | |||||||||    
T  39197772 ttataagactcttttgttattttcaactacattaatta 39197809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 32964378 - 32964310
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||| || |||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  32964378 ttataagagtcctttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 32964310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 37915197 - 37915265
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| | ||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  37915197 ttataagactcatttgatgttttcaagtacattaattatttctttaccaacatacccttatttattttg 37915265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 42538570 - 42538606
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatt 383  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  42538570 ttataagactcttttgatattttcaagtgcattaatt 42538606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 13598569 - 13598645
Alignment:
Q  342 tcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  13598569 tcttattataagact---ttgttatttccaagtgcattaattaatttttcaccatcatacccctatttattttggatatt 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 12969557 - 12969632
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| ||||||||| | ||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  12969557 gtctctttttataagacccctttgttattttcaaatatattaattaattctttaccaacatacccctatttatttt 12969632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 14493779 - 14493729
Alignment:
Q  364 tattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||||||| |||||||||||| || |||| ||||||||||||||||||    
T  14493779 tattttcaaatacattaattaattctttaccaacatacccctatttatttt 14493729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 41422566 - 41422634
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||| ||||||||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  41422566 ttataaaactcttttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 41422634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 41494605 - 41494537
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||| ||||||||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  41494605 ttataaaactcttttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 41494537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 12296420 - 12296345
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||| |||||||||   |||| ||||| ||| | |||||||||||| || |||| ||||||||||||||||||    
T  12296420 gtctctttttataagacatctttgatatttccaagtacattaattaattctttaccaacatacccctatttatttt 12296345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 9701124 - 9701192
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  9701124 ttataagacccttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 9701192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 28566205 - 28566273
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| ||||||||||| ||||||||| || || || | ||||| | |||||||||||    
T  28566205 ttataagactcatttggtattttcaaatacattaattatttatttactaacatactcttatttattttg 28566273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 30857992 - 30858060
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||  | ||||||||| || || |||| ||||||| |||||||||||    
T  30857992 ttataagactcttttggtatttccatgtacattaattatttctttaccaacatacccttatttattttg 30858060  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 5244610 - 5244536
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    |||||||||||||||| ||||| ||| | ||||||||| ||||| |||| ||||||| ||||||||||| |||||    
T  5244610 ttataagactcttttggtatttccaagtacattaattatttttttaccaacatacccttatttattttgcatatt 5244536  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 13335879 - 13335842
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||||||||||||||| |||||||||||    
T  13335879 ttataagactcttttgttattttcaactgcattaatta 13335842  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 30512816 - 30512889
Alignment:
Q  342 tcttattataagactcttttgttattttcaaatgcattaattaa-tttttcaccatcatacccctatttatttt 414  Q
    |||| ||||||||| | |||| ||||||||| | |||||||||| ||||| |||| ||||||||||||||||||    
T  30512816 tctttttataagacccctttggtattttcaagtacattaattaatttttttaccaacatacccctatttatttt 30512889  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 24260942 - 24260870
Alignment:
Q  342 tcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    |||| ||||||||  | |||| ||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  24260942 tctttttataagatccctttgatatttccaagtgcattaattaattttttaccaacatacccttatttatttt 24260870  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 41898479 - 41898411
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  41898479 ttataagactcttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 41898411  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 2786163 - 2786238
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||||||| |||||   |||||||||| ||| | ||||||||||||||| |||| |||| | |||||||||||    
T  2786163 gtctcttattacaagacctatttgttatttccaagtacattaattaattttttaccaacatatctctatttatttt 2786238  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 19176190 - 19176258
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  19176190 ttataagacccttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 19176258  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 23497774 - 23497850
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||| ||||||||| |||||| |||||  || | ||||||||| || || |||| ||||||| |||||||||||    
T  23497774 gtctctttttataagacccttttggtatttataagtacattaattatttctttaccaacatacccttatttattttg 23497850  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 38183552 - 38183512
Alignment:
Q  344 ttattataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||| |||||||||||||||| | |||||||||    
T  38183552 ttattataagacccttttgttattttcaactacattaatta 38183512  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 35909695 - 35909766
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtat 418  Q
    |||||||||||||||| ||||| ||| | ||||||||| || || |||| ||||||| ||||||||||||||    
T  35909695 ttataagactcttttggtatttccaagtccattaattatttctttaccaacatacccttatttattttgtat 35909766  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 8418336 - 8418262
Alignment:
Q  340 tctcttattataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    |||||| ||||||||  | |||| ||||||||| | |||||||||||| || |||| ||||||||||||||||||    
T  8418336 tctctttttataagatccatttggtattttcaagtacattaattaattctttaccaacatacccctatttatttt 8418262  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 38613461 - 38613535
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttgtatatt 421  Q
    ||||||||||| |||| ||||||||| | ||||||||| || || |||| ||||||| ||||||||||| |||||    
T  38613461 ttataagactcatttggtattttcaagtacattaattatttctttaccaacatacccttatttattttgcatatt 38613535  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 17261391 - 17261436
Alignment:
Q  339 gtctcttattataagactcttttgttattttcaaatgcattaatta 384  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||    
T  17261391 gtctctttttataagactcttttgatattttcaagtgcattaatta 17261436  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 13498469 - 13498401
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||||| |||| ||||||||| | ||||||||| || || |||| ||||||| |||||||||||    
T  13498469 ttataagactcatttggtattttcaagtacattaattatttctttaccaacatacccttatttattttg 13498401  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 13138780 - 13138847
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttatttt 414  Q
    ||||||||||| |||||||||||||| | ||||||||| || || || | ||||||| ||||||||||    
T  13138780 ttataagactcatttgttattttcaactacattaattatttctttactaacatacccttatttatttt 13138847  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 25474870 - 25474907
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||||||||||||||| | |||||||||    
T  25474870 ttataagactcttttgttattttcaagtacattaatta 25474907  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 50424837 - 50424800
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaatta 384  Q
    |||||||||||||||||||||||||| | |||||||||    
T  50424837 ttataagactcttttgttattttcaactacattaatta 50424800  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 6629456 - 6629388
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  6629456 ttataagacgcttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 6629388  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 39797488 - 39797556
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  39797488 ttataagacccttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 39797556  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 17518 - 17586
Alignment:
Q  347 ttataagactcttttgttattttcaaatgcattaattaatttttcaccatcatacccctatttattttg 415  Q
    ||||||||| |||||| ||||| ||| | ||||||||| || || |||| ||||||| |||||||||||    
T  17518 ttataagacccttttggtatttccaagtacattaattatttctttaccaacatacccttatttattttg 17586  T

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