View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_75 (Length: 431)
Name: NF20384_low_75
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 26 - 418
Target Start/End: Original strand, 32100047 - 32100437
Alignment:
| Q |
26 |
tcataatcaacacacttatattaataatatcttcatagtatttcatcaacnnnnnnnntagtatgtcttaaatattgtatcacctatcacacaattaatg |
125 |
Q |
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| T |
32100047 |
tcataatcaacacacttgtattaataatatcttcatagtatttcatcaacaaaaaaaatagtatgtcttaaatattgtatcacctatcacacaattaatg |
32100146 |
T |
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| Q |
126 |
acacaacagtttgaaaaatgactcatcaaaagattaaagtgtacttgaatccatggatgttagtattttgccggtggtacatcnnnnnnnnnnnnnnnnn |
225 |
Q |
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| T |
32100147 |
acacaacagtttgaaaaatgactcatcaaaagattaaagtgtacttgaatccatggatgttagtattttgccggtggtacatc----aataataataata |
32100242 |
T |
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| Q |
226 |
nngtacctaaatttgtttaggttgtcatatagtataaggccctgtatttaatactaccaacttattttatcctacttgagagaataatgaatcctcttag |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32100243 |
tagtacctaaatttgtttaggttgtcatatagtataaggccctgtatttaatactaccaacttattttatcctacttgagagaataatgaatcctattag |
32100342 |
T |
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| Q |
326 |
agtagaatat--tnnnnnnnntacccactccgtaccataaataactaaatactatgtaggcataattaattattctattattctaccttataact |
418 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32100343 |
agtagaatataaaacaaaaaatacccactccgtaccataaataactaaatactatgtaggtataattaattattctattattctaccttataact |
32100437 |
T |
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