View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_76 (Length: 428)
Name: NF20384_low_76
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_76 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 12344307 - 12343898
Alignment:
| Q |
1 |
caaaactcatttcattcattaaatatatactctctttttactttaaagataaataaatttaaccgaggccaagtagttgatacatgttcctcatgcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12344307 |
caaaactcatttcattcattaaatatatactctctttttactttaaagataaataaatttaaacgaggccaagtagttgatacatgttcctcatgcaaac |
12344208 |
T |
|
| Q |
101 |
ctccttactcactatgtcacacatacgtgtcatcacacaactacatcacttttttctataaaactaaaaacataagttaagtcttcaactactttcattc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
12344207 |
ctccttactcactatgtcacacgtacgtgtcatcacacaactacatcacttttttctataaaattaaaaacataagtta-gtcttcaactactttcattc |
12344109 |
T |
|
| Q |
201 |
ata-ataaatcttcaaattctgttctcaacatttacttcaatcaatggcaacggatcgtacaacaccacaccaaatccaagttcacacaacaacacgccg |
299 |
Q |
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| T |
12344108 |
attcataaatcttcaaattctgatctcaacatttacttcaatcaatggcaacggatcgtacaacaccacaccaaatccaagttcacacaacaacacgccg |
12344009 |
T |
|
| Q |
300 |
ttacgatactgttacacctccattgcattatgaaggcggtggtggagttgcaactcatcattactcagacaacaaaagtccatcaacctctcaagttctt |
399 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344008 |
ttacgatactattacccctccattgcattatgaaggcggtggtggagttgcaactcatcattactcagacaacaaaagtccatcaacctctcaagttctt |
12343909 |
T |
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| Q |
400 |
gccgtgattac |
410 |
Q |
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| T |
12343908 |
gccgtgattac |
12343898 |
T |
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Back To:
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 15248855 - 15248807
Alignment:
| Q |
71 |
aagtagttgatacatgttcctcatgcaaacctccttactcactatgtca |
119 |
Q |
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| T |
15248855 |
aagtagttgatacacgttcctcatgcaaacctacgtactcaccatgtca |
15248807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 582471 - 582431
Alignment:
| Q |
82 |
acatgttcctcatgcaaacctccttactcactatgtcacaca |
123 |
Q |
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| T |
582471 |
acatgttcctcatgcaaacctcc-tactcaccatgtcacaca |
582431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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