View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_79 (Length: 425)
Name: NF20384_low_79
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_79 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 38293681 - 38293274
Alignment:
| Q |
17 |
tatgaagttgtattagaatctcacatttgacggttgggtaacatgtgtatgtatgtttgagcgctttcattccttgagttaatttttagaagagaaatca |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| ||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
38293681 |
tatgaagttgtattagaatcttacatt-gacggttggataa-atatgtgtgtatgtttgaacgctttcattccttgaggtaacttttagaagagaaatca |
38293584 |
T |
|
| Q |
117 |
aaatttattttacaaaactcgacttttaatttattagacaagattttcaaaagatatcatattctttattatagattcaattggtgttacataattgata |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38293583 |
aaatttattttacaaaactcaccttttaatttatcagacaagattttcaaaagatatcatattctttattataaattcaattggtgttacataattgata |
38293484 |
T |
|
| Q |
217 |
tatcaaccccttaaatagatctttgttatctcgagttgatac-----------------atagtcattggtaaaaataagtaaaaagattagaaattaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38293483 |
tatcaaccccttaaatagatctttgttatctcgagtcgataccttgatttatcaagaaaatagtcattggtaaaaataagtaaaaagaatagaaattaat |
38293384 |
T |
|
| Q |
300 |
tcttctttcattggcatttggcattgtatatgcgtgcattctaaatgctatatcatatatttgacaggttatgataagtagaatggcagcatgtaccatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38293383 |
tcttctttcattggcatttggcattgtatatgcgtgcattctaaatgctatatcatatatttgacaggttatgataagtagaatggcagcatgtaccatt |
38293284 |
T |
|
| Q |
400 |
tccatgctag |
409 |
Q |
| |
|
|||||||||| |
|
|
| T |
38293283 |
tccatgctag |
38293274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University