View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_8 (Length: 673)
Name: NF20384_low_8
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 22 - 655
Target Start/End: Complemental strand, 36636434 - 36635800
Alignment:
| Q |
22 |
gaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgggatagtatatacttactt |
121 |
Q |
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| T |
36636434 |
gaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgggatagtatatacttactt |
36636335 |
T |
|
| Q |
122 |
gagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatgttcgttttcgcagcagtatccaattaatttgaccaaatttg |
221 |
Q |
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| T |
36636334 |
gagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatgttcgttttcgcagcagtatccaattaatttgaccaaatttg |
36636235 |
T |
|
| Q |
222 |
gatgtgaaagctgccccaaaaatatcacttctgcctgtaaacaaagcaatcaaaaccacaactaatctaaatgctgttttctt-acaagtttctgtctct |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36636234 |
gatgtgaaagctgccccaaaaatatcacttctgcctgtaaacaaagcaatcaaaaccacaactaatctaaatgctgttttctttacaagtttctgtctct |
36636135 |
T |
|
| Q |
321 |
aaatttttgtcgttattttaattttcttgataatgatttttctatgtttagagagaatatatagataatataccagccattctctgtggccttgatgact |
420 |
Q |
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| T |
36636134 |
aaatttttgtcgttattttaattttcttggtaatgatttttctatgtttagagagaatatatagataatataccagccattctctgtggccttgatgact |
36636035 |
T |
|
| Q |
421 |
attgtcaccatcatgaaccttaacagctacaggaagagaaggaagatcatcccttaactcctcagaaataaatcctttataaacacttccaaatccacct |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636034 |
attgtcaccatcatgaaccttaacagctacaggaagagaatgaagatcatcccttaactcctcagaaataaatcctttataaacacttccaaatccacct |
36635935 |
T |
|
| Q |
521 |
ccccctaacacacgatccggtctaaaattcccagttattttctttagctcatcataagtgaatgcaatcaatggatttgcagctgagttatcacgtctaa |
620 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635934 |
ccccctaacacacgatctggtctaaaattcccagttattttctttagttcatcataagtgaatgcaatcaatggatttgcagctgagttatcacgtctaa |
36635835 |
T |
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| Q |
621 |
gatcttcaacttcttcaggattcgatggtaactta |
655 |
Q |
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| T |
36635834 |
gatcttcaacttcttcaggattcgatggtaactta |
36635800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 10845290 - 10845355
Alignment:
| Q |
197 |
tatccaattaatttgaccaaatttggatgtgaaagctgccccaaaaatatcacttctgcctgtaaa |
262 |
Q |
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|||||||| ||||| ||||||||||||||| |||||||| | ||| |||||||||||||||||| |
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| T |
10845290 |
tatccaatcaattttaccaaatttggatgtcttagctgcccaagaaaaatcacttctgcctgtaaa |
10845355 |
T |
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