View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_80 (Length: 423)
Name: NF20384_low_80
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 384
Target Start/End: Original strand, 17735499 - 17735869
Alignment:
| Q |
13 |
acattgtttccggcgtcaaatgaacaatctatttgatattgaaatatggatctggcaaacattggaaacccatcagcaatacttgttggaccactaatta |
112 |
Q |
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| T |
17735499 |
acattgtttccgatgtcaaatgaacaatctatttgatattgaaataaggttcgtgcaaacattggaaacccatcagcaatacttgttggaccactaatta |
17735598 |
T |
|
| Q |
113 |
tatctttctttttggctccaagagcataattcacaacaacatacttatctttcacaaccacgtaacattcattagctacagatgaacagaatgcagcatc |
212 |
Q |
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| T |
17735599 |
tatctttctttttgcctccaggagcataattcacaaccacatacttatctttcacaaagatgtaacattcattagttacagatgaacggaatgcagcatc |
17735698 |
T |
|
| Q |
213 |
tatggaatttggcatttttcttattggaggaggatattgtta--nnnnnnnncaaggtaatggatatgaaatgtttttctttcagtttgtgaaagcttct |
310 |
Q |
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| T |
17735699 |
tatggaatttgccatttttcttatt---ggaggatattgttattttttttttcaaggtaatggatatgaaatgtttttctttcagtttgtgaaagcttct |
17735795 |
T |
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| Q |
311 |
atttatatagattttatgttaccgtataatgtgaacacaaaatattaaatttgacacaaagtaaactcttcaat |
384 |
Q |
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| T |
17735796 |
atttatatagattttatgttaccgtataatgtgaacacaaaatattaaatttgacacaaagtaaactcttcaat |
17735869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 15964406 - 15964175
Alignment:
| Q |
11 |
caacattgtttccggcgtcaaatgaacaatctatttgatattgaaatatggatctggcaaacattggaaacccatcagcaatacttgttggaccactaat |
110 |
Q |
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| T |
15964406 |
caacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattagcaaacattggaaacccaccagcaatatttgttggagcactgat |
15964307 |
T |
|
| Q |
111 |
tatatctttctttttggctccaagagcataattcacaacaacatacttatctttcacaaccacgtaacattcattagctacagatgaacagaatgcagca |
210 |
Q |
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| T |
15964306 |
tatatctttcttttgacctccaggagcataatttacaaccatatacttttgtttcacaaatatgtaacattcattcgctttggatgaacaaaatgcagca |
15964207 |
T |
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| Q |
211 |
tctatggaatttggcatttttcttattggagg |
242 |
Q |
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| T |
15964206 |
tctatggcgtttggcatttttctttttggagg |
15964175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 68 - 350
Target Start/End: Original strand, 17699444 - 17699732
Alignment:
| Q |
68 |
caaacattggaaacccatcagcaatacttgttggaccactaattatatctttctttttggctccaagagcataattcacaacaacatacttatctttcac |
167 |
Q |
| |
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||||||| ||||||||||||| |||| | ||||| ||||||| | ||||||||| ||||| | |||||||||||||| |||||||||| |||||| |
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| T |
17699444 |
caaacatcggaaacccatcagtaatattatccggacccttaattatttggttctttttgcctccaggggcataattcacaaccacatacttatttttcac |
17699543 |
T |
|
| Q |
168 |
aaccacgtaacattcattagctacagatgaacagaatgcagcatctatggaatttggcatttttcttattggagg-------aggatattgttannnnnn |
260 |
Q |
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|| ||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||||||| | | || || |
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| T |
17699544 |
aaacacataacattcattctctctagatgaacggaatgcagcatctacggaatttggcattttttttattggaggattctttaattttttttttttttct |
17699643 |
T |
|
| Q |
261 |
nncaaggtaatggatatgaaatgtttttctttcagtttgtgaaagcttctatttatatagattttatgttaccgtataatgtgaacacaa |
350 |
Q |
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| T |
17699644 |
ttcaaggtaatggatatgaaatgttttgctttccgtttatgaaagcttctatttatatagatgtaatgttaccg-ataatgtgaacacaa |
17699732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 17592897 - 17593198
Alignment:
| Q |
68 |
caaacattggaaacccatcagcaatacttgttggaccactaattatatctttctttttggctccaagagcataattcacaacaacatacttatctttcac |
167 |
Q |
| |
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||||||| ||||||||||||| |||| | ||||| ||||||| | ||||||||| ||||| | |||||||||||||| |||||||||| |||||| |
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| T |
17592897 |
caaacatcggaaacccatcagtaatattatccggacccttaattatttggttctttttgcctccaggggcataattcacaaccacatacttatttttcac |
17592996 |
T |
|
| Q |
168 |
aaccacgtaacattcattagctacagatgaacagaatgcagcatctatggaatttggcatttttcttattggaggaggat---attgt---tannnnnnn |
261 |
Q |
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|| ||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| | ||| | | |
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| T |
17592997 |
aaacacgtaacattcattctctttagatgaacagaatgcagcatctacggaattttgcattttttttattggaggattctttaattttttcttttttctt |
17593096 |
T |
|
| Q |
262 |
ncaaggtaatggatatgaaatgtttttctttcagtttgtgaaagcttctatttatatagattttatgttaccgtataatgtgaacacaaaatattaaatt |
361 |
Q |
| |
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|||||||||||||||||||| |||| ||||| |||| |||||||||| |||||||||||| | ||||||||| ||||||||||||| || |||||||| |
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| T |
17593097 |
tcaaggtaatggatatgaaatattttgctttccgtttatgaaagcttccatttatatagatgtaatgttaccg-ataatgtgaacac--aacattaaatt |
17593193 |
T |
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| Q |
362 |
tgaca |
366 |
Q |
| |
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||||| |
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| T |
17593194 |
tgaca |
17593198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 365
Target Start/End: Original strand, 17726880 - 17727145
Alignment:
| Q |
100 |
ggaccactaattatatctttctttttggctccaagagcataattcacaacaacatacttatctttcacaaccacgtaacattcattagctacagatgaac |
199 |
Q |
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| T |
17726880 |
ggaccactaattatttggttctttttctctccaggagcataattcacaaccacatactttcctctcgcaaatacgaaacactcgttgaatttagatgaac |
17726979 |
T |
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| Q |
200 |
agaatgcagcatctatggaatttggcattttt-cttattggaggaggatattgttannnnnnnncaaggtaatggatatgaaatgtttttctttcagttt |
298 |
Q |
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| T |
17726980 |
agaatgcagcatctatattattcggcattttttcttattggaggattct-ttattttttttctccaaggtaatggatatgaaatgttttgctttcagttt |
17727078 |
T |
|
| Q |
299 |
gtgaaa-gcttctatttatatagattttatgttaccgtataatgtgaacacaaaatattaaatttgac |
365 |
Q |
| |
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|||||| || | |||||||||| |||||| |||| ||||||||| |||| |||||||||||||| |
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| T |
17727079 |
gtgaaaagccattgtttatatagaggttatgtaaccgg-taatgtgaatacaagatattaaatttgac |
17727145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 17736491 - 17736578
Alignment:
| Q |
151 |
acatacttatctttcacaaccacgtaacattcattagctacagatgaacagaatgcagcatctatggaatttggcatttttcttattg |
238 |
Q |
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| T |
17736491 |
acatacatatctttcacaaagatgtaacattcattatctacagatgaacggaatgcatcatctattttatttgccatttttcttattg |
17736578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 17763429 - 17763546
Alignment:
| Q |
271 |
tggatatgaaatgtttttctttcagtttgtgaaagcttctatttatatagattttatgttaccgtataatgtgaacacaaaatattaaatttgac-acaa |
369 |
Q |
| |
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||||||||||||||| | |||| |||| |||||| || |||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| |
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| T |
17763429 |
tggatatgaaatgttatgctttaggtttatgaaaggctccatttatatagatgttatgttaccg-gtaatgtgaacacaaaatattggatttgactccaa |
17763527 |
T |
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| Q |
370 |
agtaaactcttcaatgcgt |
388 |
Q |
| |
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||| |||||||||| |||| |
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| T |
17763528 |
agtgaactcttcaaagcgt |
17763546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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