View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_81 (Length: 422)
Name: NF20384_low_81
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_81 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 159 - 361
Target Start/End: Complemental strand, 18671024 - 18670822
Alignment:
| Q |
159 |
ttgcacaatgtttgagtgtggtgctcgatttggaaaaggagaggtatgttaaaatgccttttacatctcttttacaattcaggagaatagaaatatgaaa |
258 |
Q |
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| T |
18671024 |
ttgcacaatgtttgagtgtggtgctcgatttggaaaaggagaggtacgttaaaatgccttttacatttcttttacaattcaggagaatagaaatatgaaa |
18670925 |
T |
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| Q |
259 |
ttagattatatctcactaaaaagctatgtgaatatagttgttaggatcacaagttaaataatagcatcaataaatattacgatcttacaatcacttggag |
358 |
Q |
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| T |
18670924 |
ttagattatatctcactaaaaagctatgtgaatatagttgttaagatcacaagttaaatcatagcatcaataaatattacgatcttacatccacttggag |
18670825 |
T |
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| Q |
359 |
ata |
361 |
Q |
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||| |
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| T |
18670824 |
ata |
18670822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 13340199 - 13340246
Alignment:
| Q |
245 |
atagaaatatgaaattagattatatctcactaaaaagctatgtgaata |
292 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
13340199 |
atagaaatatgaaattagattatatttcactggaaacctatgtgaata |
13340246 |
T |
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