View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_82 (Length: 421)
Name: NF20384_low_82
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 3566054 - 3565667
Alignment:
| Q |
19 |
ctcatcttcttcattatggtcttgtgttacatcgacaaaggaaccctacgtgctagtatcatcttgcgcattcacatctaagtctccaacataattaact |
118 |
Q |
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| T |
3566054 |
ctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccttacgtgctagtatcatcttgcgcattcacatctaagtctccaacagaattaact |
3565955 |
T |
|
| Q |
119 |
tgaatgttggcctttatttccacttctatttgcaaatcttgggcctttaacagttcagcaggtgaagtgtttttgtcaggagtcttcacattagactgca |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565954 |
tgaatgttggcatttatttccacttctatttgcaaatcttgggcctttaagagttcagcaggtgaagtgtttttgtcaggagtcttcacattagactgca |
3565855 |
T |
|
| Q |
219 |
cctcctcttgttccttatcattcttatcatttccaggtaattcctcaacattgataacttctttctcaacattgattacttccttacctttacccaatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |
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| T |
3565854 |
cctcctcttgttccttatcattcttatcatttccagccaattcctcaacattgataacttctttctcgacattgattacttccttacctttactcagtat |
3565755 |
T |
|
| Q |
319 |
tctttgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatggcctatcgttctacaatgggtgcaataagctgg |
406 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565754 |
tctctgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatggcctatcgttctacaatgggtgcaataagctgg |
3565667 |
T |
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