View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_83 (Length: 420)
Name: NF20384_low_83
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 33362042 - 33361637
Alignment:
| Q |
1 |
aactctattttaccaattcattgagctgaaagtagtaccataaagacattatatatcatagaagaccggggataagatccatttcattatcccatagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33362042 |
aactctattttaccaattcattgagctgaaagcagtaccataaagacattatatatcatagaagaccggggat---------ttcattatcccatagtta |
33361952 |
T |
|
| Q |
101 |
ggtcacacaaattatcatattaggttatttcatgcaaatttataatgataataactattttatcaaattgactattacttgattatcctttttcnnnnnn |
200 |
Q |
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| T |
33361951 |
ggtcacacaaattatcatattaggttatttcatgcaaatttataatgataataacaattttatcaaattgactattacttgattatcctttttaaaaaaa |
33361852 |
T |
|
| Q |
201 |
nnnnnnnnnnnnctattacttgaatatcatctacataaatattgtaatgtgaaaagtaataactcttgaaagtgatgcacatagtcttaattagatgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
33361851 |
aaaaaaaaaaaactattacttgaatatcatctacataaatattgtaatgtgaaaagtaataactctagaaagtgatgcacacagtcttaattagatgata |
33361752 |
T |
|
| Q |
301 |
tacttagaaaaaagtaattgtaattatattgaaaataaaata-----aaatttacactctttttgagaca----nnnnnnnctttaagttatacgatact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
33361751 |
tacttagaaaaaagtaattgtaattatattgaaaataaaataaaataaaatttacactctttttgtgacatttttttctttctttaagttatacgatact |
33361652 |
T |
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| Q |
392 |
aattatagaataatg |
406 |
Q |
| |
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||||||||||||||| |
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| T |
33361651 |
aattatagaataatg |
33361637 |
T |
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