View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_84 (Length: 418)
Name: NF20384_low_84
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_84 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 32365971 - 32365554
Alignment:
| Q |
1 |
tcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaa |
100 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
32365971 |
tcgctgtatcgggagcgattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaaaaaagtctgagaggaatacatggtttgaaataaataa |
32365872 |
T |
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| Q |
101 |
ccaaatactaaatgctctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatcttgttcttttgtgtagatggacaccaaatgatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365871 |
ccaaatactaaatgctctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatcttgttcttttgtgtagatggacaccaaatgatgtt |
32365772 |
T |
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| Q |
201 |
tctgcacttaggatgatttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365771 |
tctgcacttaggatgatttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttg |
32365672 |
T |
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| Q |
301 |
ctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattggagttggaattactatatccattgcaattgcagcaccggc |
400 |
Q |
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| T |
32365671 |
ctcaatatgcactttgtagtctaaatttaggatataaaagatctgagagaccagccattggagttggaattactatatccattgcaattgcagcaccggc |
32365572 |
T |
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| Q |
401 |
aatagctggattgtacac |
418 |
Q |
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| T |
32365571 |
aatagctggattgtacac |
32365554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 32377656 - 32377240
Alignment:
| Q |
1 |
tcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377656 |
tcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaa |
32377557 |
T |
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| Q |
101 |
ccaaatactaaatgctctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatcttgttcttttgtgtagatggacaccaaatgatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
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| T |
32377556 |
ccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggagatcaaatgatatt |
32377457 |
T |
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| Q |
201 |
tctgcacttaggatgatttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttg |
300 |
Q |
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| T |
32377456 |
actacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttg |
32377357 |
T |
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| Q |
301 |
ctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattggagttggaattactatatccattgcaattgcagcaccggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| |||||||||| |||||||| |
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| T |
32377356 |
ctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaattgcggcaccggc |
32377257 |
T |
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| Q |
401 |
aatagctggattgtaca |
417 |
Q |
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| T |
32377256 |
aacagctggattgtaca |
32377240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 370
Target Start/End: Complemental strand, 36122395 - 36122244
Alignment:
| Q |
219 |
tactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttgta |
318 |
Q |
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|||||||| ||||| ||||||||||||||||||||| ||| || |||||||| || |||||| |||||| |||||||| ||||| |||||| |||| |
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| T |
36122395 |
tactgcaagaatggaacttataagcctcatgaatggaaacacataatggtagtggtaattctcggtcatgtgaactgtttcgctcagtatgcactttgcg |
36122296 |
T |
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| Q |
319 |
gtctaaatttaggatataaaagatctgagagaccagccattggagttggaat |
370 |
Q |
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||||||| ||||| ||||||||||||||| | || |||||||| |||||||| |
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| T |
36122295 |
gtctaaacttaggttataaaagatctgagcgcccggccattggtgttggaat |
36122244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 36122539 - 36122475
Alignment:
| Q |
75 |
aggaatacatggtttgaaataagtaaccaaatactaaatgctctctttacactaatgtgtttgta |
139 |
Q |
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| T |
36122539 |
aggaatgcgtggtttgaagtaaacaatcaaatactcaatgctctgtttacactgatgtgtttgta |
36122475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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