View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_88 (Length: 411)
Name: NF20384_low_88
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_88 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 8014583 - 8014203
Alignment:
| Q |
17 |
tacatattaacctcaatcactaagtttaaaatgtctgtttccttgacactctcttgttcccttcagcttgaatccaatctaagtgaaagaaaaacagttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8014583 |
tacatattaacctcaatcactaagtttaaaatgtctgtttccttgacactcacttgttcccttcagcttgaatccaatctaagtgaaagaaaaacagttc |
8014484 |
T |
|
| Q |
117 |
tagaggtttgtgatacaattgtaaagcgaggcggtagcttggctggtgcaggaattgtcggaattctgcaaaaaatggaagaggactcaaaaggtcttat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8014483 |
tagaggtttgtgatacaattgtaaagcgaggcggtagcttagctggtgcaggaattgtcgggattctgcaaaaaatggaagaggactcaaaaggtcttat |
8014384 |
T |
|
| Q |
217 |
ctttggaaagagaagcgttgttgccattgatgggggtttgtatgaaaattatcctcaatacaggacttacttgcaacattcagtaaaggaactattagga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8014383 |
ctttggaaagagaagcgttgttgccattgatgggggtttgtatgaaaattatcctcaatacaggacttacttgcaacattcagtaaaggagctattagga |
8014284 |
T |
|
| Q |
317 |
acagaaaagtcaaacaatgttgttatagaacattcaaaagatggttctggtattggaggtgctctattggcagcttcaaat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8014283 |
acagaaaagtcaaacaatgttgttatagaacattcaaaagatggttctggtattggaggtgctctattggcagcttcaaat |
8014203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University