View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_89 (Length: 410)
Name: NF20384_low_89
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_89 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 201 - 410
Target Start/End: Original strand, 17381318 - 17381524
Alignment:
| Q |
201 |
taattttattccaatttgaaggtatagaaaggttaaatttcacacttcaattttgggcatgtggttgtaacctacctgtatatcaacagggtactttgtg |
300 |
Q |
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| T |
17381318 |
taatttaattccaatttgaaggta--gaaaggttaaatttcacact-caattttgggcatgtgattgtaacctacctgtatatcaacagggtactttgtg |
17381414 |
T |
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| Q |
301 |
acagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaggcctttggtgtgatgt |
400 |
Q |
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| T |
17381415 |
actgtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaagcctttggtgtgatgt |
17381514 |
T |
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| Q |
401 |
gtgaagcatt |
410 |
Q |
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| T |
17381515 |
gtgaagcatt |
17381524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 17381096 - 17381267
Alignment:
| Q |
19 |
tcccacttatgacatgttttaaagactaaagacatatcttatctaatgcaagactttaacatcactcatagtcattctcaattatg-tgacactcaccac |
117 |
Q |
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| T |
17381096 |
tcccacttatgacatgttttaaagactaaagacatatctaatctattgcgagactttaacatcactcatagtcat--tcaattatgttgacattcaccac |
17381193 |
T |
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| Q |
118 |
ccttatgtgtgtgtcatacaagtaaaccttagagagatgaaatcaattttacctaatgttaagcaaacatattc |
191 |
Q |
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| T |
17381194 |
ccttatgtgtgtgtcatacaagcaaactttagagagatgaaatcaattttacctaattttttgcaaacatattc |
17381267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 406
Target Start/End: Original strand, 39524313 - 39524446
Alignment:
| Q |
273 |
tacctgtatatcaacagggtactttgtgacagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcc |
372 |
Q |
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| T |
39524313 |
tacctgaatatcaacggggtacttagagacactgagtgagagagcagcatcaaacatatcatatggtcgacattcaaaaacatcagttaaccgttgctcc |
39524412 |
T |
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| Q |
373 |
catctgtccaaggcctttggtgtgatgtgtgaag |
406 |
Q |
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| T |
39524413 |
catctgtccaaggctgctggtgtaatgtgtgaag |
39524446 |
T |
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