View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_90 (Length: 406)
Name: NF20384_low_90
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_90 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 126 - 383
Target Start/End: Complemental strand, 54237316 - 54237060
Alignment:
| Q |
126 |
gtctattggcataaagatttgaccaaacatatgtgtggaaaaacggagaattatggattcgaatccaacatgcaatgccattttatacaatttggacgct |
225 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
54237316 |
gtctattggcataaagatttgaccaa-catatgtgtggaaaaacggagaattatggattcgaatccgacatgcagtgccattttatacaatttggacgct |
54237218 |
T |
|
| Q |
226 |
ctattgtaaatgtctgatttagtcacggttgatcggtaacaaatatataggggtctaaagtctttccccactactaactaagctatacttacacgaccac |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54237217 |
ctattgtaaatgtctgatttagtcacggttgatcggtaacaaatatataggggtctaaagtctttccccactactaactaagctatacttacactaccac |
54237118 |
T |
|
| Q |
326 |
ttgtgcattttttaatctacaatatatttattaatgtcatttctttttatcaatataa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54237117 |
ttgtgcattttttaatctacaatatatttattaatgtcatttctttttatcaatataa |
54237060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 54237430 - 54237357
Alignment:
| Q |
11 |
catattccaaataaaatgccttcgggttaattccttacttactaataattaacagcacttgtgcatttttcctt |
84 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54237430 |
catattccaaacaaaatgccttcgggttaattccttacttactaataattaacagcacttgtgcatttttcctt |
54237357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University