View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_91 (Length: 406)

Name: NF20384_low_91
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_91
NF20384_low_91
[»] chr1 (4 HSPs)
chr1 (1-401)||(15304704-15305104)
chr1 (289-392)||(15308500-15308603)
chr1 (344-403)||(20618071-20618130)
chr1 (294-334)||(14526591-14526631)
[»] chr3 (2 HSPs)
chr3 (297-394)||(7566487-7566584)
chr3 (293-358)||(21822891-21822956)
[»] chr6 (1 HSPs)
chr6 (349-403)||(28609182-28609236)
[»] scaffold0098 (1 HSPs)
scaffold0098 (292-397)||(3277-3382)
[»] chr4 (1 HSPs)
chr4 (292-388)||(8718052-8718148)
[»] chr2 (2 HSPs)
chr2 (292-403)||(15583027-15583139)
chr2 (293-358)||(11536580-11536646)
[»] chr7 (2 HSPs)
chr7 (337-387)||(27128790-27128840)
chr7 (287-366)||(7395235-7395314)
[»] scaffold0070 (1 HSPs)
scaffold0070 (292-320)||(2797-2825)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 15305104 - 15304704
Alignment:
Q  1 tccaacatgatactatcaaggaaagggaatgtcctagtgaatccaccaagaaagttgcactacgagtttatgagagaattttatgctaatataatgtatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305104 tccaacatgatactatcaaggaaagggaatgtcctagtgaatccaccaagagagttgcactacgagtttatgagagaattttatgctaatataatgtatt 15305005  T
Q  101 tcctgcacaagaaaatcctttcaactattccacaacggtatggggtagagtaataagggttgaccaggaagctatcaatacctattcataaagcttgtat 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15305004 tcctacacaagaaaatcctttcaactattccacaacggtatggggtagagtaataagggttgactaggaagctatcaatacctattcataaagcttgtat 15304905  T
Q  201 catgaccatgcagataagttatgccaattttcaaaacagttgatcacgataggtaactaaactctcctttgttggtcatgcatctcatatctcatgggta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304904 catgaccatgcagataagttatgccaattttcaaaacagttgatcacgataggtaactaaactctcctttgttggtcatgcatctcatatctcatgggta 15304805  T
Q  301 actaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatgttttcagtataa 400  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15304804 actaaactctcttttgtgttaggatttgatgtaaaaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatgttttcaatataa 15304705  T
Q  401 t 401  Q
    |    
T  15304704 t 15304704  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 15308603 - 15308500
Alignment:
Q  289 atctcatgggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatg 388  Q
    ||||||||||||||||||||||||||| |||| | ||| ||||||   |||||  ||| ||||||||||| |||||||| || |||||||| |||||||     
T  15308603 atctcatgggtaactaaactctcttttatgttggaattagatgtatatagctatgaatttatgtagtactcttaatctggtttgttgtatatgatttatc 15308504  T
Q  389 tttt 392  Q
    ||||    
T  15308503 tttt 15308500  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 20618130 - 20618071
Alignment:
Q  344 aatctatgtagtactattaatctgattggttgtatacgatttatgttttcagtataatct 403  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||  |||| ||||||||    
T  20618130 aatctatgtagtactcttaatctggttggttgtatatgatttatggattcaatataatct 20618071  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 14526591 - 14526631
Alignment:
Q  294 atgggtaactaaactctcttttgtgttaggatttgatgtaa 334  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  14526591 atgggtaactaaaccctcttttgtgttgggattggatgtaa 14526631  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 7566584 - 7566487
Alignment:
Q  297 ggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatgttttca 394  Q
    ||||||||||||||||  |||||| ||||| |||||||  |||||  || |||||||||| | | ||||||| |||||||||| ||||||||||||||    
T  7566584 ggtaactaaactctctcctgtgttgggattggatgtaaatagctaggaacctatgtagtagtctaaatctgactggttgtatatgatttatgttttca 7566487  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 21822891 - 21822956
Alignment:
Q  293 catgggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtact 358  Q
    ||||||||| |||||||||| || |||||||||| ||||| |  |||||  |||||||||||||||    
T  21822891 catgggtaattaaactctctcttttgttaggattggatgtgaatagctaggaatctatgtagtact 21822956  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 28609182 - 28609236
Alignment:
Q  349 atgtagtactattaatctgattggttgtatacgatttatgttttcagtataatct 403  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||    
T  28609182 atgtagtactattaatctgattggttgtatatgatttatgcattcaatataatct 28609236  T

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Target: scaffold0098 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 3277 - 3382
Alignment:
Q  292 tcatgggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatgttt 391  Q
    ||||||||||||||||| |||||| |||| ||||| |||||||  || || |||||||||||||||| |||||  |  ||| | |||| ||||||||||     
T  3277 tcatgggtaactaaactttcttttatgttgggattggatgtaaataggtagaaatctatgtagtactcttaattcggctggatatatatgatttatgttc 3376  T
Q  392 tcagta 397  Q
    ||||||    
T  3377 tcagta 3382  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 8718148 - 8718052
Alignment:
Q  292 tcatgggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatctgattggttgtatacgatttatg 388  Q
    ||||||||||||||||||||||||||||| ||||| |||||||  || ||  | | |||| |||||| ||||| ||  ||||||||| |||||||||    
T  8718148 tcatgggtaactaaactctcttttgtgttgggattggatgtaaatagttaggattttatgcagtactcttaatatggctggttgtattcgatttatg 8718052  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 15583139 - 15583027
Alignment:
Q  292 tcatgggtaactaaactctcttttgtgttaggatttgatgtaaca-agctacaaatctatgtagtactattaatctgattggttgtatacgatttatgtt 390  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| | ||||| || ||| |||||| || ||||| ||  |||||||||| |||||||||     
T  15583139 tcattggtaactaaactctcttttgtgttgagattagatgtaagatagctagaattctttgtagtgctcttaatatgggtggttgtatatgatttatgta 15583040  T
Q  391 ttcagtataatct 403  Q
    || | ||||||||    
T  15583039 ttaaatataatct 15583027  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 11536646 - 11536580
Alignment:
Q  293 catgggtaactaaactctcttttgtgttaggatttgatgtaaca-agctacaaatctatgtagtact 358  Q
    |||||||||||||||||||| ||||||||||||| || |||| | |||||  |||||||||| ||||    
T  11536646 catgggtaactaaactctctcttgtgttaggattggaagtaaaatagctaggaatctatgtaatact 11536580  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 27128840 - 27128790
Alignment:
Q  337 agctacaaatctatgtagtactattaatctgattggttgtatacgatttat 387  Q
    ||||| ||||||||||||||||||||||||  ||||||||||| |||||||    
T  27128840 agctataaatctatgtagtactattaatcttgttggttgtatatgatttat 27128790  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 7395314 - 7395235
Alignment:
Q  287 atatctcatgggtaactaaactctcttttgtgttaggatttgatgtaacaagctacaaatctatgtagtactattaatct 366  Q
    |||| ||||||||||||||||||||||  |||||||| || ||| |||  || ||  ||||||||||||| |||||||||    
T  7395314 atatatcatgggtaactaaactctcttcggtgttagggttggatataaatagttaggaatctatgtagtaatattaatct 7395235  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 2825 - 2797
Alignment:
Q  292 tcatgggtaactaaactctcttttgtgtt 320  Q
    |||||||||||||||||||||||||||||    
T  2825 tcatgggtaactaaactctcttttgtgtt 2797  T

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