View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_92 (Length: 406)
Name: NF20384_low_92
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_92 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 8180818 - 8180423
Alignment:
| Q |
17 |
accttttgctaacgtgaggcaattatacaacaaaacaggctgaaacagaaactgtagcaacagctcacagctgctgtcacacaacattctatcctgccca |
116 |
Q |
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| T |
8180818 |
accttttgctaacgtgaggcaattatacaacaaaacaggctgaaacagaaactgtagcaacagctcacagctgctgtcacacaacattctatcctgccca |
8180719 |
T |
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| Q |
117 |
caacaaccnnnnnnncgcctatgaggacaccaagaccagtcccagccgaggcatgaactaaagcaatgaggatgcagccaaaacaggaacatatcacagc |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8180718 |
caacaaccaaaaaaacgcctatgaggacaccaagaccagtcccagccgaggcacgaactaaagcaatgaggatgcagccaaaacaggaacatatcacagc |
8180619 |
T |
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| Q |
217 |
tgttgtatgagcagtcagccaccaacaccaaacagaaggcaaaacagccccaaaagtgatgtatataaatatagttaatactaaagttgactcttatgag |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8180618 |
tgttgtacgagcagtcagccaccaacaccaaacagaaggcaaaacagccccaaaagtgatgtatataaatatagttaatactaaagttgactcttatgag |
8180519 |
T |
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| Q |
317 |
tatgccacatatcttaagatcatcattg-------------atatatacaatataggttgaataatttggtcaggcgttggtttagttttcatctc |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
8180518 |
tatgccacatatcttaagatcatcattgtaggcatgtcttaatatatacaatataggtaggataatttggtcaggcgttggtttagttttcatctc |
8180423 |
T |
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