View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_96 (Length: 401)
Name: NF20384_low_96
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 55244980 - 55245366
Alignment:
| Q |
1 |
tgattgatgtgatatatagctgaaggtgatgtaaacaa-gtaagagaaaaaggtgaaggttgagatcagatgaatttatcaatgaaatgaaata-tggta |
98 |
Q |
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| T |
55244980 |
tgattgatgtcatatatagctgaaggtgatgtaaacaaagtaagagaaaaaggtgaaggttgagatgagatgaatttatgaatgaaatatggtagtccca |
55245079 |
T |
|
| Q |
99 |
agcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaacagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245080 |
agcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaacagt |
55245179 |
T |
|
| Q |
199 |
gtctttttccttaccttcttttacactagaaaacaatcttaattcaacaaagtctgatgaaaatccttcaaacttatatcatataccatcttcacctccc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245180 |
gtctttttccttaccttcttttacactagaaaacaatcttaattcaacaaagtctgatgaaaatccttcaaacttatatcatataccatcttcacctccc |
55245279 |
T |
|
| Q |
299 |
atttctcattcaattcaattcaaaggaatcttcagataagctaaggttcacaggtgcaataaagtgctcaacttggtcattcaatac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55245280 |
atttctcattcaattcaattcaaaggaatcttcagacaagctaaggttcacaggtgcaatgaagtgctcaacttggtcattcaatac |
55245366 |
T |
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