View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_98 (Length: 395)

Name: NF20384_low_98
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_98
NF20384_low_98
[»] chr8 (4 HSPs)
chr8 (1-377)||(9825275-9825651)
chr8 (9-115)||(27289778-27289888)
chr8 (75-128)||(21512232-21512285)
chr8 (3-55)||(39902993-39903045)
[»] chr3 (2 HSPs)
chr3 (3-123)||(38565534-38565655)
chr3 (11-116)||(32135088-32135194)
[»] chr5 (1 HSPs)
chr5 (76-128)||(40156505-40156557)
[»] chr2 (1 HSPs)
chr2 (4-123)||(28646137-28646256)
[»] chr6 (1 HSPs)
chr6 (75-122)||(14217142-14217189)
[»] chr4 (1 HSPs)
chr4 (75-114)||(52879072-52879111)
[»] chr7 (2 HSPs)
chr7 (75-121)||(3043176-3043222)
chr7 (88-129)||(17867960-17868001)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 9825275 - 9825651
Alignment:
Q  1 atatttatgatcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaa-gcgcaaaatatttaaagaatttgacttac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  9825275 atatttatgatcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaaagcgcaaaatgtttaaagaatttgacttac 9825374  T
Q  100 gaaaatatagttaaagcaaaaaaggtttgaactttggaggcctatgctaaggtctaannnnnnnggagatctaaaactcttgttttagtggtagtcccct 199  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||       ||||||||||||| ||||||| ||||| ||||| ||    
T  9825375 gaaaatatagctaaagcgaaaaagatttgaactttggaggcctatgctaaggtctaatttttttggagatctaaaacccttgtttcagtggcagtccgct 9825474  T
Q  200 tgagtcgacc----ctgacttacttttagaggatcttttcctaacttcattaatatatataatttgtgttgtcccttctgccaaaatgtaccatgtgact 295  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||||||||||    
T  9825475 tgagtcgaccgaccctgacttacttttagaggatcttttcctaacttcattaatatata--atttgtgttgtcccttc---caaaatgtaccatgtgact 9825569  T
Q  296 ttcttgtatgaatgctatcaagaaccgaaacaaaccaaaaacaatgccaccacgttaattttgatgaaatgattgctaacat 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9825570 ttcttgtatgaatgctatcaagaaccgaaacaaaccaaaaacaatgccaccacgttaattttgatgaaatgattgctaacat 9825651  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 27289888 - 27289778
Alignment:
Q  9 gatcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaagcgc----aaaatatttaaagaatttgacttacgaaaa 104  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||||||| || |||||||   ||    |||| | ||||| |||||||||||||||||    
T  27289888 gatcaaacttgcaacatgaactaaaagtctataactcttcatttaactactaaccgagttagatgcaaaaaaaaaaattaaaaaatttgacttacgaaaa 27289789  T
Q  105 tatagttaaag 115  Q
    |||| ||||||    
T  27289788 tatatttaaag 27289778  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 21512232 - 21512285
Alignment:
Q  75 aaaatatttaaagaatttgacttacgaaaatatagttaaagcaaaaaaggtttg 128  Q
    ||||| |||||||||||||||||||||||||||| ||||| | |||||| ||||    
T  21512232 aaaatgtttaaagaatttgacttacgaaaatatatttaaaacgaaaaagatttg 21512285  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 39902993 - 39903045
Alignment:
Q  3 atttatgatcaaacttgcaacataaacaacaactctataactcttcatttaac 55  Q
    ||||| ||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  39902993 atttaagatcaaacttgcaacataaactacaaatctacaactctccatttaac 39903045  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 38565655 - 38565534
Alignment:
Q  3 atttatgatcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaagcgca-aaatatttaaagaatttgacttacga 101  Q
    ||||| |||||||||  |||||| ||| || | |||| ||||||||||||||||||||||| || |||||| | |||||||||||| ||||||||||||     
T  38565655 atttaagatcaaactcacaacatgaaccacgagtctacaactcttcatttaactaccaatcaagctaagcgtagaaatatttaaaggatttgacttacgg 38565556  T
Q  102 aaatatagttaaagcaaaaaag 123  Q
    |||||||  |||||||||||||    
T  38565555 aaatatatctaaagcaaaaaag 38565534  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 32135194 - 32135088
Alignment:
Q  11 tcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaagcgcaaaa-tatttaaagaatttgacttacgaaaatatag 109  Q
    ||||||||||||||||||| |||| |||| |||||| |||||||||| |||  ||| ||   |||||| | ||||||||||||||| |||| |||||||     
T  32135194 tcaaacttgcaacataaactacaagtctacaactctccatttaactatcaactgagctagaagcaaaagtttttaaagaatttgacatacggaaatatat 32135095  T
Q  110 ttaaagc 116  Q
    |||||||    
T  32135094 ttaaagc 32135088  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 40156505 - 40156557
Alignment:
Q  76 aaatatttaaagaatttgacttacgaaaatatagttaaagcaaaaaaggtttg 128  Q
    |||| |||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  40156505 aaatgtttaaagaatttaacttacaaaaatatatttaaagcaaataaggtttg 40156557  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 28646256 - 28646137
Alignment:
Q  4 tttatgatcaaacttgcaacataaacaacaactctataactcttcatttaactaccaatcgagttaagcgcaaaa-tatttaaagaatttgacttacgaa 102  Q
    |||| |||||||| |||||||||||  | || |||| |||||| ||||||||||| || ||||  |  | ||||| | |||||||| |||||||||||||    
T  28646256 tttaagatcaaacatgcaacataaatcaaaagtctacaactctccatttaactactaaccgagcaagacacaaaaatgtttaaagagtttgacttacgaa 28646157  T
Q  103 aatatagttaaagcaaaaaag 123  Q
    |||||| ||||||| ||||||    
T  28646156 aatata-ttaaagcgaaaaag 28646137  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 14217189 - 14217142
Alignment:
Q  75 aaaatatttaaagaatttgacttacgaaaatatagttaaagcaaaaaa 122  Q
    |||||||||||||||||| ||| || |||||||| |||||||||||||    
T  14217189 aaaatatttaaagaatttaactcacaaaaatatatttaaagcaaaaaa 14217142  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 52879072 - 52879111
Alignment:
Q  75 aaaatatttaaagaatttgacttacgaaaatatagttaaa 114  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  52879072 aaaatatttaaagaatttgacttacaaaaatatatttaaa 52879111  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 3043176 - 3043222
Alignment:
Q  75 aaaatatttaaagaatttgacttacgaaaatatagttaaagcaaaaa 121  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||||||    
T  3043176 aaaatgtttaaagaatttgactagcgaaaatatatttaaagcaaaaa 3043222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 17868001 - 17867960
Alignment:
Q  88 aatttgacttacgaaaatatagttaaagcaaaaaaggtttga 129  Q
    ||||||||||||||||||||| ||||||| |||||| |||||    
T  17868001 aatttgacttacgaaaatatatttaaagctaaaaagatttga 17867960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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