View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20385_high_2 (Length: 455)
Name: NF20385_high_2
Description: NF20385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20385_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 28494275 - 28494691
Alignment:
| Q |
24 |
aacaagattgaatataaatgaaagatagagaaatttggtggaccttattaatgaatgcagtaacaagaaagaagaaattacttaattaaaactaaggaat |
123 |
Q |
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| T |
28494275 |
aacaagattgaatataaatgaaagataaagaaatttggtggaccttattaatgaatgcagtaacaaggaagaagaaattacttaattaaaactaaggaat |
28494374 |
T |
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| Q |
124 |
acttctaaggtggtccaacaagctagtaacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattgtccctatagatcctt |
223 |
Q |
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| T |
28494375 |
aattctaaggtggtccaacaagctagtaacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatcctt |
28494474 |
T |
|
| Q |
224 |
ccctcttcttcaaccataactagtctaatcgaatgagccaccaaatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcnnnn |
323 |
Q |
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| T |
28494475 |
ccctcttcttcaaccataactaacctaatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttct |
28494574 |
T |
|
| Q |
324 |
nnncttccaacactcttgcatttattccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccc |
423 |
Q |
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| T |
28494575 |
tttcttccaacattcttgcatttattccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccc |
28494674 |
T |
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| Q |
424 |
tgcatgagtcaagaatc |
440 |
Q |
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| T |
28494675 |
tgcatgagtcaagaatc |
28494691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 124 - 440
Target Start/End: Original strand, 28506921 - 28507237
Alignment:
| Q |
124 |
acttctaaggtggtccaacaagctagtaacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattgtccctatagatcctt |
223 |
Q |
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|||| |||||||| ||||||| || |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| || |
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| T |
28506921 |
acttgtaaggtggctcaacaagttattaacatatttatcttgtctttcaatattgacaaacaagtccttcatgttcttaatattttctctatagatcatt |
28507020 |
T |
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| Q |
224 |
ccctcttcttcaaccataactagtctaatcgaatgagccaccaaatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcnnnn |
323 |
Q |
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| T |
28507021 |
ccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttct |
28507120 |
T |
|
| Q |
324 |
nnncttccaacactcttgcatttattccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccc |
423 |
Q |
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| T |
28507121 |
tttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccc |
28507220 |
T |
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| Q |
424 |
tgcatgagtcaagaatc |
440 |
Q |
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| T |
28507221 |
tgcatgagtcaagaatc |
28507237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 124 - 431
Target Start/End: Original strand, 28491056 - 28491363
Alignment:
| Q |
124 |
acttctaaggtggtccaacaagctagtaacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattgtccctatagatcctt |
223 |
Q |
| |
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|||| |||||||||| |||||| | || ||||||||||||||||||| |||||||||||| ||||||| | |||||||| |||||||| ||||| |
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| T |
28491056 |
acttttaaggtggtctaacaagttgtcaatatatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctc |
28491155 |
T |
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| Q |
224 |
ccctcttcttcaaccataactagtctaatcgaatgagccaccaaatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcnnnn |
323 |
Q |
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| T |
28491156 |
ccttcttcttcaagcataactagtctaattgtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttct |
28491255 |
T |
|
| Q |
324 |
nnncttccaacactcttgcatttattccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccc |
423 |
Q |
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| T |
28491256 |
tttcttccaacaccttcgcatttattccctggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacc |
28491355 |
T |
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| Q |
424 |
tgcatgag |
431 |
Q |
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||| |||| |
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| T |
28491356 |
tgcgtgag |
28491363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 28506789 - 28506834
Alignment:
| Q |
38 |
taaatgaaagatagagaaatttggtggaccttattaatgaatgcag |
83 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
28506789 |
taaaagaaagataaagaaatttggtgaaccttattaatgaatgcag |
28506834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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